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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL380
Library CH
(Link to library)
Clone ID CHL380
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12984-1|Contig-U16415-1
Original site URL
Representative seq. ID CHL380P
(Link to Original site)
Representative DNA sequence 
>CHL380 (CHL380Q) /CSM/CH/CHL3-D/CHL380Q.Seq.d/
AAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATCCAATTTTAGAACGTAA
AAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAATTCAGTAGTTAC
ATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACACACTTTTAATTAA
AGGTAAAAAGANAAGANATACCGTTTGTATTGTATTGTCAGATCCAACCATCGATCCATC
AAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATTAGGTGACATGAT
TTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGTGTTACCAATTGA
TGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAAACCATACTTTTT
AGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGGTGGTATGAGAGC
CGTANAATTTAAAGTTGTCGAAACCGACCCANGTGAATATTGTATCGTTGCACCAGAGAC
ATTTATACATTGCGAAGGTGANGCAGTCAAGANAGAGGATGAAGACCGTCTCGATGXXXX
XXXXXXGCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTTTANA
GGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATANAGTTATCAATCAAATTTTAACT
GAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGNGNTACCAATAGACCA
GATATCATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCA
TTACCAGATTTACCATNTCGTGTTGCCATTTTCAAGGCTTGTNTCAATAAATCACCAGTC
GCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTNTNTGGNGCAGAT
TTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGAT
ATTGAATCCNCCAAAGCCCGTCAAGAATNTGGTGATACCAANATGGAAGATGACTCTGTC
GATCCAGNACCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGATNTGCTCGTCGT
TCTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCA
ANAGGTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAA
GAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kngnn*RYXKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIK
GKKXRXTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPID
DTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVXFKVVETDPXEYCIVAPET
FIHCEGXAVKXEDEDRLD---

---AAPCVLFFDELDSIARFXGSSQGDAGGAGDXVINQILTEMDGMNAXKNVFIIGXTNR
PDIIDPXILRPGXLDQLIYIPLPDLPXRVAIFKACXNKSPVAKDVDLEFLGQXTQGXXGA
DLTEICQRACKLAIXESIEKDIESXKARQEXGDTXMEDDSVDPXPEITXDHFQXAMRXAR
RSXSDNDIRKYESFAQTLVQSXGLGNNFKFPDQESSGQFNQD
Translated Amino Acid sequence (All Frames) 
Frame A:
kkwqqlkilxr**qsnfrt*kssk*iicrrsn****fssyiksrdngsitil*r*htfn*
r*kxkxyrlycivrsnhrsikdpye*sckk*ssc*ir*hdfsspmfrc*iwqtyscvtn*
*yhrrsqwqsl*slpqtilfrslpssp*g*lifstwwyesrxi*scrnrpx*ilyrctrd
iytlrr*xsqxrg*rpsr---

---AAPCVLFFDELDSIARFXGSSQGDAGGAGDXVINQILTEMDGMNAXKNVFIIGXTNR
PDIIDPXILRPGXLDQLIYIPLPDLPXRVAIFKACXNKSPVAKDVDLEFLGQXTQGXXGA
DLTEICQRACKLAIXESIEKDIESXKARQEXGDTXMEDDSVDPXPEITXDHFQXAMRXAR
RSXSDNDIRKYESFAQTLVQSXGLGNNFKFPDQESSGQFNQD

Frame B:
kngnn*RYXKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIK
GKKXRXTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPID
DTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVXFKVVETDPXEYCIVAPET
FIHCEGXAVKXEDEDRLD---

---plhvfcslmswivlhvlxvhhkvmlvvlvixlsikf*lkwmv*tpxrtfsslxxpid
qissiqxssvqvv*insftfhyqiyhxvlpfsrlvsinhqsprm*i*nfwvkxlkvxxxq
i*lkfvnxpvn*lxvnplkrilnppkpvknxvipxwkmtlsiqxqkllvitsxkp*dxlv
vlxpimilenmkallkl*fnqxvlviisnsqiknlqvnsik

Frame C:
kmatiedtxkiitiqf*nvkklqidyl*kkqlmmiiq*lh*iqrqwinynslevthf*lk
vkrxxipfvlycqiqpsihqrsv*ikl*eiifvld*vt*fqftnvqmlnmanvfmcyqlm
ip*kvsvaisliftsnhtf*kptvqsvrvtyf*yvvv*epxnlklskptxvnivslhqrh
lyiakvxqsrxrmktvsm---

---rsmcfvl**vg*yctfxrfitr*cwwcw*xsyqsnfn*ngwyerqxerfhhwxyq*t
ryhrsxyppsrxfrsthlhsitrftxscchfqglxq*itsrqgcrfrifgskxsrfxwxr
fn*nlstxl*isyx*ih*kgy*ixqspsrxw*yqxgr*lcrsxtrnyx*slpxshexcss
fxir**y*ki*klcsnfssixrsw**fqiprsrifrsiqsr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL380 (CHL380Q) /CSM/CH/CHL3-D/CHL380Q.Seq.d/                       2260   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                       1146   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                       1144   0.0
AHH765 (AHH765Q) /CSM/AH/AHH7-C/AHH765Q.Seq.d/                       1140   0.0
AFH318 (AFH318Q) /CSM/AF/AFH3-A/AFH318Q.Seq.d/                       1140   0.0
AHE864 (AHE864Q) /CSM/AH/AHE8-C/AHE864Q.Seq.d/                       1138   0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/                       1134   0.0
VHJ543 (VHJ543Q) /CSM/VH/VHJ5-B/VHJ543Q.Seq.d/                       1132   0.0
VHH667 (VHH667Q) /CSM/VH/VHH6-C/VHH667Q.Seq.d/                       1132   0.0
VHF432 (VHF432Q) /CSM/VH/VHF4-B/VHF432Q.Seq.d/                       1132   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.  1144   0.0    2
CV239703|CV239703.1 WS0233.B21_D16 PT-MB-A-13 Populus balsamifera subsp. trichocarpa cDNA clone WS0233_D16 3', mRNA sequence.    68   4e-25  4
BI505199|BI505199.1 BB170019B10G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B10G02 5', mRNA sequence.    62   6e-24  5
BE579889|BE579889.1 kq34a03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:C41C4.8 CE05402 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.    56   1e-21  4
BG893512|BG893512.1 kt10d05.y2 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:TER2_CAEEL P54812 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.    48   2e-20  5
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence.   109   9e-20  2
CV835912|CV835912.1 ID0ACC29DD01RM1 ID0ACC Acyrthosiphon pisum cDNA clone ID0ACC29DD01 5', mRNA sequence.    82   1e-19  3
CF588183|CF588183.1 USDA-FP_121400-098 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-011_E12 5', mRNA sequence.    82   1e-19  3
U20213|U20213.1 Glycine max valosin-containing protein mRNA, complete cds.    58   7e-19  5
CN763635|CN763635.1 ID0AAA7CE05RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA7CE05 5', mRNA sequence.    52   2e-18  4
dna update 2005. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   359   1e-97
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle...   301   3e-80
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom...   299   1e-79
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy...   298   2e-79
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803...   297   4e-79
GM966461_1(GM966461|pid:none) Sequence 1793 from Patent WO200814...   296   1e-78
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034...   296   1e-78
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008...   296   1e-78
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034...   296   1e-78
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA.     295   2e-78
protein update 2009. 4. 8
PSORT 

 psg: 0.45  gvh: 0.33  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHL380 is nuc
5' end seq. ID CHL380F
5' end seq. 
>CHL380F.Seq
AAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATCCAATTTTAGAACGTAA
AAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAATTCAGTAGTTAC
ATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACACACTTTTAATTAA
AGGTAAAAAGANAAGANATACCGTTTGTATTGTATTGTCAGATCCAACCATCGATCCATC
AAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATTAGGTGACATGAT
TTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGTGTTACCAATTGA
TGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAAACCATACTTTTT
AGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGGTGGTATGAGAGC
CGTANAATTTAAAGTTGTCGAAACCGACCCANGTGAATATTGTATCGTTGCACCAGAGAC
ATTTATACATTGCGAAGGTGANGCAGTCAAGANAGAGGATGAAGACCGTCTCGATGNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID CHL380Z
3' end seq. 
>CHL380Z.Seq
NNNNNNNNNNGCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTT
TANAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATANAGTTATCAATCAAATTTT
AACTGAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGNGNTACCAATAG
ACCAGATATCATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACAT
TCCATTACCAGATTTACCATNTCGTGTTGCCATTTTCAAGGCTTGTNTCAATAAATCACC
AGTCGCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTNTNTGGNGC
AGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAA
GGATATTGAATCCNCCAAAGCCCGTCAAGAATNTGGTGATACCAANATGGAAGATGACTC
TGTCGATCCAGNACCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGATNTGCTCG
TCGTTCTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCA
ATCAANAGGTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAA
TCAAGAT
Length of 3' end seq. 667
Connected seq. ID CHL380P
Connected seq. 
>CHL380P.Seq
AAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATCCAATTTTAGAACGTAA
AAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAATTCAGTAGTTAC
ATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACACACTTTTAATTAA
AGGTAAAAAGANAAGANATACCGTTTGTATTGTATTGTCAGATCCAACCATCGATCCATC
AAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATTAGGTGACATGAT
TTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGTGTTACCAATTGA
TGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAAACCATACTTTTT
AGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGGTGGTATGAGAGC
CGTANAATTTAAAGTTGTCGAAACCGACCCANGTGAATATTGTATCGTTGCACCAGAGAC
ATTTATACATTGCGAAGGTGANGCAGTCAAGANAGAGGATGAAGACCGTCTCGATG----
------GCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTTTANA
GGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATANAGTTATCAATCAAATTTTAACT
GAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGNGNTACCAATAGACCA
GATATCATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCA
TTACCAGATTTACCATNTCGTGTTGCCATTTTCAAGGCTTGTNTCAATAAATCACCAGTC
GCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTNTNTGGNGCAGAT
TTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGAT
ATTGAATCCNCCAAAGCCCGTCAAGAATNTGGTGATACCAANATGGAAGATGACTCTGTC
GATCCAGNACCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGATNTGCTCGTCGT
TCTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCA
ANAGGTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAA
GAT
Length of connected seq. 1253
Full length Seq ID -
Full length Seq. -
Length of full length seq. -