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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL305
Library CH
(Link to library)
Clone ID CHL305
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11582-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHL305 (CHL305Q) /CSM/CH/CHL3-A/CHL305Q.Seq.d/
XXXXXXXXXXTCTGTNAATCCCTTANNTNAACCNTCCCCNCNTCAAGGNNCAAATCCCCT
TTGGGAAGNTCCNCCNACNTAAAAAAAAAAAAATAATAATAATAATAATAAAGTGTTGGA
AATACAATCAATCGATTACTTATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LXIPXXNXPXXKXQIPFGKXXXXKKKKIIIIIIKCWKYNQSITY
Translated Amino Acid sequence (All Frames) 
Frame A:
---LXIPXXNXPXXKXQIPFGKXXXXKKKKIIIIIIKCWKYNQSITY


Frame B:
---cxslxxtxpxsrxksplgxsxxxkkkk******svgntinrlli


Frame C:
---vnplxxpspxqgxnplwexppt*kkknnnnnnkvleiqsidyl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL305 (CHL305Q) /CSM/CH/CHL3-A/CHL305Q.Seq.d/                         66   1e-10
SSA834 (SSA834Q) /CSM/SS/SSA8-B/SSA834Q.Seq.d/                         64   6e-10
CHP544 (CHP544Q) /CSM/CH/CHP5-B/CHP544Q.Seq.d/                         64   6e-10
CHO482 (CHO482Q) /CSM/CH/CHO4-D/CHO482Q.Seq.d/                         54   5e-07
CHK686 (CHK686Q) /CSM/CH/CHK6-D/CHK686Q.Seq.d/                         54   5e-07
CHI304 (CHI304Q) /CSM/CH/CHI3-A/CHI304Q.Seq.d/                         52   2e-06
CHH444 (CHH444Q) /CSM/CH/CHH4-B/CHH444Q.Seq.d/                         46   1e-04
SLC355 (SLC355Q) /CSM/SL/SLC3-C/SLC355Q.Seq.d/                         30   8.0
own update 2002.10. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF474339|AF474339.1 Dictyostelium discoideum ABC transporter ABCC.7 (abcC7) gene, complete cds.    36   7.3    2
dna update 2005. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 44   0.002
protein update 2009. 1. 2
PSORT 

 psg: 0.76  gvh: 0.38  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHL305 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHL305Z
3' end seq. 
>CHL305Z.Seq
NNNNNNNNNNTCTGTNAATCCCTTANNTNAACCNTCCCCNCNTCAAGGNNCAAATCCCCT
TTGGGAAGNTCCNCCNACNTAAAAAAAAAAAAATAATAATAATAATAATAAAGTGTTGGA
AATACAATCAATCGATTACTTATA
Length of 3' end seq. 144
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -