>CHL257 (CHL257Q) /CSM/CH/CHL2-C/CHL257Q.Seq.d/
XXXXXXXXXXATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGT
GGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAANCCGCTCTNTTATTC
TTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTC
CACTTCCAAGAAGTNGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAA
GCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAA
GTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGC
TTATGGGCTCTNTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAANGTATTCT
CATTGGTCAAGTNGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTNGGTT
AGGTGCCTCT

---PPFILPTIIAMFLSPGGTPDVVFFSGQGAVQXALLFLALISIPVMLVIKPLFMKRFH
FQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRL
WALFIGSL*vifcilgxyshwssxtw*silgfrwfwcxvrcl

Frame A:
---stihssnhyryvlvtrwytrcclllwsrccsxrsxilgshfhssyvgh*tivheeip
lprsxkkeirsprrgt***sslhwssr*ri*ng*slcssshsyhrvcfgccfkycllssl
mgsxhwltlsyllyfgxvfslvkxnvvihswlslvlvlg*vp


Frame B:
---PPFILPTIIAMFLSPGGTPDVVFFSGQGAVQXALLFLALISIPVMLVIKPLFMKRFH
FQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRL
WALFIGSL*vifcilgxyshwssxtw*silgfrwfwcxvrcl


Frame C:
---hhsffqplslcschqvvhqmlssslvkvlfxplxyswlsfpfqlcwslnhcs*rdst
skkxkern*vttkrnmmmklstlvitvknlkwvkslfiksfipsslfwvlfqilplifay
glxslahselssvfwexiligqvergnpflafvgfgaxlgas

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL257 (CHL257Q) /CSM/CH/CHL2-C/CHL257Q.Seq.d/                        910   0.0
VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                        892   0.0
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/                        892   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        892   0.0
SHK862 (SHK862Q) /CSM/SH/SHK8-C/SHK862Q.Seq.d/                        892   0.0
SHK817 (SHK817Q) /CSM/SH/SHK8-A/SHK817Q.Seq.d/                        892   0.0
SHK285 (SHK285Q) /CSM/SH/SHK2-D/SHK285Q.Seq.d/                        892   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                        892   0.0
SHJ677 (SHJ677Q) /CSM/SH/SHJ6-D/SHJ677Q.Seq.d/                        892   0.0
SHG617 (SHG617Q) /CSM/SH/SHG6-A/SHG617Q.Seq.d/                        892   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   690   0.0    2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    72   1e-08  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    72   1e-08  1
CO114093|CO114093.1 GR__Eb015A17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 5', mRNA sequence.    64   2e-06  1
CO121598|CO121598.1 GR__Eb02N16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 5', mRNA sequence.    64   2e-06  1
CO127208|CO127208.1 GR__Eb11K12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11K12 3', mRNA sequence.    64   2e-06  1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    64   2e-06  1
CO114094|CO114094.1 GR__Eb015A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 3', mRNA sequence.    64   2e-06  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    64   2e-06  1
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    64   2e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   243   1e-63
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   243   1e-63
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   110   5e-27
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   110   9e-26
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   103   1e-25
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   103   1e-25
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   101   1e-25
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   103   2e-25
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   100   1e-24
AM494960_175(AM494960|pid:none) Leishmania braziliensis chromoso...    96   1e-23

 psg: 0.96  gvh: 0.62  alm: 0.18  top: 0.77  tms: 0.07  mit: 0.25  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHL257 is nuc

>CHL257Z.Seq
NNNNNNNNNNATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGT
GGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAANCCGCTCTNTTATTC
TTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTC
CACTTCCAAGAAGTNGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAA
GCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAA
GTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGC
TTATGGGCTCTNTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAANGTATTCT
CATTGGTCAAGTNGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTNGGTT
AGGTGCCTCT