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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL252
Library CH
(Link to library)
Clone ID CHL252
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11830-1
Original site URL
Representative seq. ID CHL252P
(Link to Original site)
Representative DNA sequence 
>CHL252 (CHL252Q) /CSM/CH/CHL2-C/CHL252Q.Seq.d/
ATTTAGCCATGTTAATATTAATTCATAAAGATATTTGAACATTTATTTATTTATTTATTT
ATTTTATTANGACAGAAACTTTTTTGTAAAAAAAAAATATTATTCAAAATAAAAAAAAAA
AAAANTAAAAAANTAAAAAAAAAAAAAAAAAAANTTNGGGGGGGGNAAAAAAAACCCCCC
CCCCCNCNNNNNNNNNCNNNANNNCNAAAANNAACCNNAAAAAAAAXXXXXXXXXXGTTA
TTATATATGTTTTATCAAGTCAAAGTTTATCAAGTAATAATAATAATAACTCAACACCAA
CAATTGAACCAAATTATGTAACAACTGTTGATATTCATACATTTATAACATCACATAAAG
TATTATTAAATTTAAATAATAATTTAATACCTGATAGAAATAGTGTTACAAATTGTCTTT
CACATCAACACCGTATATTTAAATCTGGTAAAGAAATTTATGGTTGCGGTTATTGGTCAC
TCAAAGATCCATATGAAGATCCTTGGAATGAATCAATTGATTCAAATTCTTCAACCCCAT
CATCATCACCTTTAAATCCTTTAATTTGTGGTGCAATCACTAATCGTGGAAATATTTGTA
AGAAACCATTAAATAAATGTTCATTTCATTCAAATAAACCTGGTATAAAAAATATCTNTT
CAATAACAACCATAACAAATAATAATACAAACAGCTTTTATTTAATTCAAAAACAGCAAC
AACAACAACTTCAACATCAACAACAACAGCAACAGCAACAACAAAATAATAGTAATAGTA
ATAATGAAGATGAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
i*pc*y*FIKIFEHLFIYLFILLXQKLFCKKKILFKIKKKKXKKXKKKKKKXXGGXKKPP
PPXXXXXXXKXTXKK---

---VIIYVLSSQSLSSNNNNNSTPTIEPNYVTTVDIHTFITSHKVLLNLNNNLIPDRNSV
TNCLSHQHRIFKSGKEIYGCGYWSLKDPYEDPWNESIDSNSSTPSSSPLNPLICGAITNR
GNICKKPLNKCSFHSNKPGIKNIXSITTITNNNTNSFYLIQKQQQQQLQHQQQQQQQQQN
NSNSNNEDE
Translated Amino Acid sequence (All Frames) 
Frame A:
i*pc*y*FIKIFEHLFIYLFILLXQKLFCKKKILFKIKKKKXKKXKKKKKKXXGGXKKPP
PPXXXXXXXKXTXKK---

---VIIYVLSSQSLSSNNNNNSTPTIEPNYVTTVDIHTFITSHKVLLNLNNNLIPDRNSV
TNCLSHQHRIFKSGKEIYGCGYWSLKDPYEDPWNESIDSNSSTPSSSPLNPLICGAITNR
GNICKKPLNKCSFHSNKPGIKNIXSITTITNNNTNSFYLIQKQQQQQLQHQQQQQQQQQN
NSNSNNEDE

Frame B:
fshvnins*rylniylfiylfyxdrnffvkkkyysk*kkkkxkx*kkkkkxxgggkknpp
pxxxxxxxxxxpxkk---

---llymfyqvkvyqviiiitqhqqlnqim*qllifihl*hhikyy*i*iii*ylieivl
qivfhintvylnlvkkfmvavighskihmkilgmnqliqilqphhhhl*il*fvvqsliv
eifvrnh*invhfiqinlv*kisxq*qp*qiiiqtafi*fknsnnnnfninnnsnsnnki
ivivimkmn

Frame C:
lamlilihkdi*tfiylfiyfixtetfl*kkniiqnkkkkx*kxkkkkkkxxggxkktpp
pxxxxxxxkxnxkk---

---yyicfikskfik*****lntnn*tklcnnc*ysyiynit*siikfk**fnt**k*cy
klsftstpyi*iw*rnlwlrllvtqrsi*rsle*in*fkffnpiiitfksfnlwcnh*sw
kyl*etik*mfisfk*twykkylfnnnhnk**ykqllfnsktattttststttatattk*
******r*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL252 (CHL252Q) /CSM/CH/CHL2-C/CHL252Q.Seq.d/                        928   0.0
SLG393 (SLG393Q) /CSM/SL/SLG3-D/SLG393Q.Seq.d/                        601   e-171
VHI702 (VHI702Q) /CSM/VH/VHI7-A/VHI702Q.Seq.d/                         48   2e-04
VHD121 (VHD121Q) /CSM/VH/VHD1-A/VHD121Q.Seq.d/                         46   8e-04
SHC779 (SHC779Q) /CSM/SH/SHC7-D/SHC779Q.Seq.d/                         46   8e-04
SHA295 (SHA295Q) /CSM/SH/SHA2-D/SHA295Q.Seq.d/                         46   8e-04
SFF617 (SFF617Q) /CSM/SF/SFF6-A/SFF617Q.Seq.d/                         46   8e-04
CHS134 (CHS134Q) /CSM/CH/CHS1-B/CHS134Q.Seq.d/                         46   8e-04
CHN769 (CHN769Q) /CSM/CH/CHN7-C/CHN769Q.Seq.d/                         46   8e-04
AHG595 (AHG595Q) /CSM/AH/AHG5-D/AHG595Q.Seq.d/                         46   8e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   4e-15  10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    46   3e-13  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   3e-11  8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   1e-10  10
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    42   1e-10  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   2e-10  12
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    42   2e-10  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    46   4e-10  7
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    34   9e-10  18
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   9e-10  7
dna update 2005. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_20(AC117075|pid:none) Dictyostelium discoideum chromoso...    42   0.028
AC117081_12(AC117081|pid:none) Dictyostelium discoideum chromoso...    37   0.90
AE014185_77(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    34   5.8
protein update 2009. 4. 8
PSORT 

 psg: 0.98  gvh: 0.63  alm: 0.31  top: 0.97  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHL252 is nuc
5' end seq. ID CHL252F
5' end seq. 
>CHL252F.Seq
ATTTAGCCATGTTAATATTAATTCATAAAGATATTTGAACATTTATTTATTTATTTATTT
ATTTTATTANGACAGAAACTTTTTTGTAAAAAAAAAATATTATTCAAAATAAAAAAAAAA
AAAANTAAAAAANTAAAAAAAAAAAAAAAAAAANTTNGGGGGGGGNAAAAAAAACCCCCC
CCCCCNCNNNNNNNNNCNNNANNNCNAAAANNAACCNNAAAAAAAANNNNNNNNNN
Length of 5' end seq. 236
3' end seq. ID CHL252Z
3' end seq. 
>CHL252Z.Seq
NNNNNNNNNNGTTATTATATATGTTTTATCAAGTCAAAGTTTATCAAGTAATAATAATAA
TAACTCAACACCAACAATTGAACCAAATTATGTAACAACTGTTGATATTCATACATTTAT
AACATCACATAAAGTATTATTAAATTTAAATAATAATTTAATACCTGATAGAAATAGTGT
TACAAATTGTCTTTCACATCAACACCGTATATTTAAATCTGGTAAAGAAATTTATGGTTG
CGGTTATTGGTCACTCAAAGATCCATATGAAGATCCTTGGAATGAATCAATTGATTCAAA
TTCTTCAACCCCATCATCATCACCTTTAAATCCTTTAATTTGTGGTGCAATCACTAATCG
TGGAAATATTTGTAAGAAACCATTAAATAAATGTTCATTTCATTCAAATAAACCTGGTAT
AAAAAATATCTNTTCAATAACAACCATAACAAATAATAATACAAACAGCTTTTATTTAAT
TCAAAAACAGCAACAACAACAACTTCAACATCAACAACAACAGCAACAGCAACAACAAAA
TAATAGTAATAGTAATAATGAAGATGAATT
Length of 3' end seq. 570
Connected seq. ID CHL252P
Connected seq. 
>CHL252P.Seq
ATTTAGCCATGTTAATATTAATTCATAAAGATATTTGAACATTTATTTATTTATTTATTT
ATTTTATTANGACAGAAACTTTTTTGTAAAAAAAAAATATTATTCAAAATAAAAAAAAAA
AAAANTAAAAAANTAAAAAAAAAAAAAAAAAAANTTNGGGGGGGGNAAAAAAAACCCCCC
CCCCCNCNNNNNNNNNCNNNANNNCNAAAANNAACCNNAAAAAAAA----------GTTA
TTATATATGTTTTATCAAGTCAAAGTTTATCAAGTAATAATAATAATAACTCAACACCAA
CAATTGAACCAAATTATGTAACAACTGTTGATATTCATACATTTATAACATCACATAAAG
TATTATTAAATTTAAATAATAATTTAATACCTGATAGAAATAGTGTTACAAATTGTCTTT
CACATCAACACCGTATATTTAAATCTGGTAAAGAAATTTATGGTTGCGGTTATTGGTCAC
TCAAAGATCCATATGAAGATCCTTGGAATGAATCAATTGATTCAAATTCTTCAACCCCAT
CATCATCACCTTTAAATCCTTTAATTTGTGGTGCAATCACTAATCGTGGAAATATTTGTA
AGAAACCATTAAATAAATGTTCATTTCATTCAAATAAACCTGGTATAAAAAATATCTNTT
CAATAACAACCATAACAAATAATAATACAAACAGCTTTTATTTAATTCAAAAACAGCAAC
AACAACAACTTCAACATCAACAACAACAGCAACAGCAACAACAAAATAATAGTAATAGTA
ATAATGAAGATGAATT
Length of connected seq. 786
Full length Seq ID -
Full length Seq. -
Length of full length seq. -