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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL243
Library CH
(Link to library)
Clone ID CHL243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHL243 (CHL243Q) /CSM/CH/CHL2-B/CHL243Q.Seq.d/
XXXXXXXXXXCAACCATTGCAACNGTNATCATTGCCATTTTGAATGATGGTACCATGTTA
ACAATCTCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAA
GTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTT
GCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGAT
AATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTC
GTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCT
TTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCA
CATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGT
GGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGCTTCCTTTGGTACATTCCAATGGAT
TTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGAT
GCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTC
TCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCAT
CATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTTAAATAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---TIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFA
IIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAF
VMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDF
IKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQETHH
KSVVTDNKV*nnnni*i
Translated Amino Acid sequence (All Frames) 
Frame A:
---nhcnxxhchfe*wyhvnnl*rscks*k*trsmesfrsihygtllwflfsrfnhcilc
nhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scnlcf
ryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcldlvlplvhsngf
h*irchlyspw*d*tnq*rctp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrnps
*iccyr**slk*q*yln


Frame B:
---TIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFA
IIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAF
VMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDF
IKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQETHH
KSVVTDNKV*nnnni*i


Frame C:
---plqxxslpf*mmvpc*qslkiv*elemnqingifskyslwhfvmvsi**vqplyslq
sfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*slls
lclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlgfgasfgtfqwis
ln*vspifsvvrlnqsikmhsvksmvglvkksqrkqlkslikllnnklkemlymhkkpii
nlllpiikfkitiifk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL243 (CHL243Q) /CSM/CH/CHL2-B/CHL243Q.Seq.d/                       1505   0.0
CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/                       1497   0.0
CHL228 (CHL228Q) /CSM/CH/CHL2-B/CHL228Q.Seq.d/                       1497   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                       1495   0.0
VHB591 (VHB591Q) /CSM/VH/VHB5-D/VHB591Q.Seq.d/                       1489   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1483   0.0
CHR710 (CHR710Q) /CSM/CH/CHR7-A/CHR710Q.Seq.d/                       1483   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1481   0.0
VHA802 (VHA802Q) /CSM/VH/VHA8-A/VHA802Q.Seq.d/                       1475   0.0
VHA582 (VHA582Q) /CSM/VH/VHA5-D/VHA582Q.Seq.d/                       1475   0.0
own update 2004. 7.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1489   0.0    1
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   0.009  2
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   0.011  2
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   0.012  2
BG170647|BG170647.1 602323513F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE:4426826 5', mRNA sequence.    34   0.045  2
BX855588|BX855588.6 Zebrafish DNA sequence from clone CH211-276E22 in linkage group 4  Contains the siah2l gene for seven in absentia homolog 2  (Drosophila)-like, the gene for a novel protein similar to  vertebrate fibrinogen-like 2 (FGL2) and two novel genes.    38   0.11   5
CC536700|CC536700.1 CH240_415D2.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_415D2, genomic survey sequence.    46   0.18   2
CL553671|CL553671.1 OB__Ba0001O16.r OB__Ba Oryza brachyantha genomic clone OB__Ba0001O16 3', genomic survey sequence.    48   0.23   1
AC128372|AC128372.5 Rattus norvegicus clone CH230-164C7, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.23   1
AC106297|AC106297.5 Rattus norvegicus clone CH230-78I14, WORKING DRAFT SEQUENCE, 1 ordered piece.    48   0.23   1
dna update 2005. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   500   e-140
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   500   e-140
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   158   2e-37
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   152   1e-35
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   151   2e-35
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   151   2e-35
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   150   5e-35
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   149   1e-34
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   149   1e-34
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   148   2e-34
protein update 2009. 5.19
PSORT 

 psg: 0.96  gvh: 0.51  alm: 0.25  top: 0.60  tms: 0.33  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHL243 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHL243Z
3' end seq. 
>CHL243Z.Seq
NNNNNNNNNNCAACCATTGCAACNGTNATCATTGCCATTTTGAATGATGGTACCATGTTA
ACAATCTCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAA
GTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTT
GCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGAT
AATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTC
GTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCT
TTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCA
CATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGT
GGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGCTTCCTTTGGTACATTCCAATGGAT
TTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGAT
GCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTC
TCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCAT
CATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTTAAATAA
Length of 3' end seq. 775
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -