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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL239
Library CH
(Link to library)
Clone ID CHL239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11694-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHL239 (CHL239Q) /CSM/CH/CHL2-B/CHL239Q.Seq.d/
XXXXXXXXXXTTCNTATGCAGGTGTACCAATTAGTGAAGTATGTAAAGAGCAATATAATA
TGGGTGATGTGATTGGCTTACTTTGGTTCAAGAGAAAGTTACCACCATACGCTTCCAAGT
TCTTTGAAATGTGTTTGAAACTAGTTGCCGATCATGGTCCATGTGTTAGTGGTGCTCATA
ATACAATCGTTGCTGCTCGTGCTGGTAAGGATTTAGTATCAAGTCTTGTTTCAGGTTTAT
TAACAATTGGACCACGTTTTGGTGGTGCCATCGATGATAGTGCTCGTGTATTCCAAGATG
CAGTCGATAACAATTTACAACCATCACAATTTGTTGAAGGTATGAAATCAAAGGGTAAAA
GAATTCCAGGTATTGGTCATTTAATTAAATCTGCCGATGAAATCGATAAAAGAGTAGTAT
TATTAAAAGATTATGCTTTCACTCATTTCTCATCAACAAAATATTTAGAATACGCATTGG
AAGTTGAAAAATATACCCTTCAAAAAGCAAATAATTTAATTTTAAATGTTGATGGTTGTA
TTGGTGTATTATTTTTAGATTTATTACATTCATCCGGTTTATTCACTCAACATGAAATTA
AAGAAATTATAGATGTTGGTTATTTAAATGGTTTCTTTATTGTTGGTAGAAGTGTTGGTT
TAATCGGTCACGCATTAGATCAACGTAGAAATAAACAAGGACTTTATAGACACCAAGCTG
ATGATGTTCATTATGCCCTTTAAAATTTTAATAAATATAAATATAAAAATAAAAATAAAA
TAAAATAAAATAAAACC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SYAGVPISEVCKEQYNMGDVIGLLWFKRKLPPYASKFFEMCLKLVADHGPCVSGAHN
TIVAARAGKDLVSSLVSGLLTIGPRFGGAIDDSARVFQDAVDNNLQPSQFVEGMKSKGKR
IPGIGHLIKSADEIDKRVVLLKDYAFTHFSSTKYLEYALEVEKYTLQKANNLILNVDGCI
GVLFLDLLHSSGLFTQHEIKEIIDVGYLNGFFIVGRSVGLIGHALDQRRNKQGLYRHQAD
DVHYAL*nfnkykyknknkik*nkt
Translated Amino Acid sequence (All Frames) 
Frame A:
---SYAGVPISEVCKEQYNMGDVIGLLWFKRKLPPYASKFFEMCLKLVADHGPCVSGAHN
TIVAARAGKDLVSSLVSGLLTIGPRFGGAIDDSARVFQDAVDNNLQPSQFVEGMKSKGKR
IPGIGHLIKSADEIDKRVVLLKDYAFTHFSSTKYLEYALEVEKYTLQKANNLILNVDGCI
GVLFLDLLHSSGLFTQHEIKEIIDVGYLNGFFIVGRSVGLIGHALDQRRNKQGLYRHQAD
DVHYAL*nfnkykyknknkik*nkt


Frame B:
---xmqvyqlvkyvksniiwvm*layfgsresyhhtlpsslkcv*n*lpimvhvlvvlii
qslllvlvri*yqvlfqvy*qldhvlvvpsmivlvyskmqsitiynhhnllkv*nqrvke
fqvlvi*lnlpmksike*yy*kimlslishqqni*nthwklknipfkkqii*f*mlmvvl
vyyf*iyyihpvyslnmklkkl*mlvi*mvslllvevlv*svth*inveinkdfidtklm
mfimpfkilininikikik*nkik


Frame C:
---xcrctn**sm*rai*yg*cdwltlvqekvttirfqvl*nvfetscrswsmc*wcs*y
nrccscw*gfsikscfrfinnwttfwwchr**csciprcsr*qfttitic*ryeikg*kn
srywsfn*icr*nr*kssiikrlcfhsflinkifririgs*kiypsksk*fnfkc*wlyw
ciifrfitfirfihst*n*rnyrcwlfkwflycw*kcwfnrsrirst*k*trtl*tps**
cslcplkf**i*i*k*k*nkik*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL239 (CHL239Q) /CSM/CH/CHL2-B/CHL239Q.Seq.d/                       1441   0.0
VHB747 (VHB747Q) /CSM/VH/VHB7-B/VHB747Q.Seq.d/                       1439   0.0
VHA674 (VHA674Q) /CSM/VH/VHA6-D/VHA674Q.Seq.d/                       1439   0.0
VHI728 (VHI728Q) /CSM/VH/VHI7-B/VHI728Q.Seq.d/                       1302   0.0
CHE602 (CHE602Q) /CSM/CH/CHE6-A/CHE602Q.Seq.d/                       1302   0.0
VHA368 (VHA368Q) /CSM/VH/VHA3-C/VHA368Q.Seq.d/                       1300   0.0
VHN804 (VHN804Q) /CSM/VH/VHN8-A/VHN804Q.Seq.d/                       1281   0.0
VFK504 (VFK504Q) /CSM/VF/VFK5-A/VFK504Q.Seq.d/                       1281   0.0
VHP546 (VHP546Q) /CSM/VH/VHP5-B/VHP546Q.Seq.d/                       1241   0.0
VHC389 (VHC389Q) /CSM/VH/VHC3-D/VHC389Q.Seq.d/                       1219   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF436628|CF436628.1 EST672973 normalized cDNA library of onion Allium cepa cDNA cloneACACX24, mRNA sequence.    74   1e-09  2
CD473416|CD473416.1 nad03-8ms1-f12 Nad03 Nuphar advena cDNA clone nad03-8ms1-f12 5', mRNA sequence.    68   1e-08  2
BG523907|BG523907.1 36-76 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60   2e-08  2
BE608288|BE608288.1 sq27g07.y1 Gm-c1046 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1046-2101 5' similar to WP:D1005.1 CE06997 ATP CITRATE LYASE ;, mRNA sequence.    56   2e-07  2
BU025332|BU025332.1 QHF8P02.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF8P02, mRNA sequence.    64   2e-07  2
BU024390|BU024390.1 QHF2h04.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF2h04, mRNA sequence.    64   3e-07  2
A83051|A83051.1 Sequence 58 from Patent WO9853085.                 44   4e-07  3
Z99984|Z99984.1 Musa acuminata mRNA for unknown ripening-related protein (clone pBAN EU66).    44   4e-07  3
BG652208|BG652208.1 sad75f02.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-6028 5' similar to TR:Q9XFY7 Q9XFY7 PUTATIVE ATP-DEPENDENT CITRATE LYASE ;, mRNA sequence.    50   1e-05  2
AI960989|AI960989.1 sc93f08.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-928 5' similar to WP:D1005.1 CE06997 ATP CITRATE LYASE ;, mRNA sequence.    50   1e-05  2
dna update 2005. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YA0) RecName: Full=Probable ATP-citrate synthase;          E...   490   e-137
AP002883_22(AP002883|pid:none) Oryza sativa Japonica Group genom...   346   4e-94
AC020580_2(AC020580|pid:none) Arabidopsis thaliana chromosome 3 ...   341   2e-92
AB023034_12(AB023034|pid:none) Arabidopsis thaliana genomic DNA,...   341   2e-92
EF571302_1(EF571302|pid:none) Glycyrrhiza uralensis ATP citrate ...   338   9e-92
AJ344107_1(AJ344107|pid:none) Lupinus albus mRNA for ATP citrate...   338   1e-91
AF290958_1(AF290958|pid:none) Capsicum annuum ATP:citrate lyase ...   324   2e-87
AJ243483_1(AJ243483|pid:none) Cyanophora paradoxa mRNA for ATP c...   323   3e-87
AJ851548_1(AJ851548|pid:none) Gallus gallus mRNA for hypothetica...   304   2e-81
AK095084_1(AK095084|pid:none) Homo sapiens cDNA FLJ37765 fis, cl...   302   9e-81
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.29  top: 0.47  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHL239 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHL239Z
3' end seq. 
>CHL239Z.Seq
NNNNNNNNNNTTCNTATGCAGGTGTACCAATTAGTGAAGTATGTAAAGAGCAATATAATA
TGGGTGATGTGATTGGCTTACTTTGGTTCAAGAGAAAGTTACCACCATACGCTTCCAAGT
TCTTTGAAATGTGTTTGAAACTAGTTGCCGATCATGGTCCATGTGTTAGTGGTGCTCATA
ATACAATCGTTGCTGCTCGTGCTGGTAAGGATTTAGTATCAAGTCTTGTTTCAGGTTTAT
TAACAATTGGACCACGTTTTGGTGGTGCCATCGATGATAGTGCTCGTGTATTCCAAGATG
CAGTCGATAACAATTTACAACCATCACAATTTGTTGAAGGTATGAAATCAAAGGGTAAAA
GAATTCCAGGTATTGGTCATTTAATTAAATCTGCCGATGAAATCGATAAAAGAGTAGTAT
TATTAAAAGATTATGCTTTCACTCATTTCTCATCAACAAAATATTTAGAATACGCATTGG
AAGTTGAAAAATATACCCTTCAAAAAGCAAATAATTTAATTTTAAATGTTGATGGTTGTA
TTGGTGTATTATTTTTAGATTTATTACATTCATCCGGTTTATTCACTCAACATGAAATTA
AAGAAATTATAGATGTTGGTTATTTAAATGGTTTCTTTATTGTTGGTAGAAGTGTTGGTT
TAATCGGTCACGCATTAGATCAACGTAGAAATAAACAAGGACTTTATAGACACCAAGCTG
ATGATGTTCATTATGCCCTTTAAAATTTTAATAAATATAAATATAAAAATAAAAATAAAA
TAAAATAAAATAAAACC
Length of 3' end seq. 797
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -