CHL204 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHL204
Library	CH (Link to library)
Clone ID	CHL204 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16411-1\|Contig-U16470-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHL2-A/CHL204Q.Seq.d/
Representative seq. ID	CHL204P (Link to Original site)
Representative DNA sequence	>CHL204 (CHL204Q) /CSM/CH/CHL2-A/CHL204Q.Seq.d/ ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAA AACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATT AGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTAT ATTTGAAAAAGCTGGNGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGC CAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACA AGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGA CCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGG TGCAACCAAAGAXXXXXXXXXXAATTGATATGAGTGAATATATGGANCAACATTCGGTTT CTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTG AAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATC AACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAG GTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAAT ACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTA AAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCG ATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTC AATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACG ATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGA AACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAAT TAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTA TAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTA AATAAAAAAAAATAAAAAATAAATAAAATNCTNNCTGTTTTTTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	linnnnlhikkkffifckhiifckiiffnihiyiyiflkNKIKMSFNPEEFTDK TNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLA KQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAG ATK--- ---IDMSEYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWN VLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVI DEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDS IINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQ QQQRPASPTKKQKTIKkkiknknxxcffk
Translated Amino Acid sequence (All Frames)	Frame A: ink*lkfayikeikifyfltyyflinhiifqhtyiyiyifkiknknvisrriy* nkynfvknsrigkrkikctistntfgcyiik*rfskiyikswxrctkncwfkiis qttcskssttnfskfiiftsfkisstsskewfsfsspfnigiigryiisigrcw cnqr--- ---nyeiygxtfgfsfnwcstrlcrlsrwsinsrqkktiqcsivskssstsle csltsigrssyrwsrnrrflkccyhydlkfrsihpwtskqrrwqlfitslrsh sktfpsrvfkssrynclysierkpsyyyssikirrkeirrskyvfkdfkrcfrf nyqccisnlwwtietlhkeychtthpwwikrksrcccqkrsssqlyyrfkt ttttssfsnqktknyikknkkikxxlff* Frame B: linnnnlhikkkffifckhiifckiiffnihiyiyiflkNKIKMSFNPEEFTDK TNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLA KQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAG ATK--- ---IDMSEYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWN VLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVI DEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDS IINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQ QQQRPASPTKKQKTIKkkiknknxxcffk Frame C: *iiikiciykrnknflffvnilfsvnksynfstyiyiyiyfnkikkchliqknllik qiqfcelknwqeknqmynhqyiwllhymmkiiqnlylkklxemyqklmlvlkdyp nnlfkiqyhlkflqihyfykfdqqhvikrimviliqltiywdywmieiyyqywemlv qpk--- ---livniwxnirflvlvlhqvmvmikvvnlkpseedhtvyclmklkklinkfgm fsykywmkvvlpmvkvepisqmllslpqivvntslvnkqtkkvvttlyhklvkiksl mklenisvqsfivsmilsllhvkktfivlllfndpskrdkikiclrfqtmliq lsmlhmiqslvvdhnvtlkrilslnlvnsslvvnkkikvllsmkkiiistlilinn nnnvqllqpknkkllnkkk*kinkxlxvflk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHL731 (CHL731Q) /CSM/CH/CHL7-B/CHL731Q.Seq.d/ 2206 0.0 SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1459 0.0 SHK668 (SHK668Q) /CSM/SH/SHK6-C/SHK668Q.Seq.d/ 1459 0.0 SHK475 (SHK475Q) /CSM/SH/SHK4-D/SHK475Q.Seq.d/ 1459 0.0 SHJ832 (SHJ832Q) /CSM/SH/SHJ8-B/SHJ832Q.Seq.d/ 1459 0.0 SHJ825 (SHJ825Q) /CSM/SH/SHJ8-B/SHJ825Q.Seq.d/ 1459 0.0 SHG860 (SHG860Q) /CSM/SH/SHG8-C/SHG860Q.Seq.d/ 1459 0.0 SHG851 (SHG851Q) /CSM/SH/SHG8-C/SHG851Q.Seq.d/ 1459 0.0 SHG305 (SHG305Q) /CSM/SH/SHG3-A/SHG305Q.Seq.d/ 1459 0.0 SHG227 (SHG227Q) /CSM/SH/SHG2-B/SHG227Q.Seq.d/ 1459 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CP000029\|CP000029.1 Staphylococcus epidermidis RP62A, complete genome. 109 2e-28 31 AE016746\|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 109 2e-28 3 AX145048\|AX145048.1 Sequence 3770 from Patent WO0134809. 109 3e-28 3 AR485684\|AR485684.1 Sequence 3770 from patent US 6703492. 109 3e-28 3 AF269730\|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence. 109 3e-28 3 AX143829\|AX143829.1 Sequence 2551 from Patent WO0134809. 109 3e-28 3 AR484857\|AR484857.1 Sequence 2551 from patent US 6703492. 109 3e-28 3 AE017161\|AE017161.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 1 of 6 of the complete genome. 66 3e-17 3 AX926714\|AX926714.1 Sequence 4 from Patent WO03084989. 56 9e-17 3 AX926713\|AX926713.1 Sequence 3 from Patent WO03084989. 56 9e-17 3
dna update	2005. 2.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY764155_1(AY764155\|pid:none) Vitis vinifera heat shock protein ... 274 6e-72 AJ970534_1(AJ970534\|pid:none) Triticum turgidum subsp. durum par... 272 2e-71 AJ970533_1(AJ970533\|pid:none) Triticum turgidum subsp. durum par... 271 4e-71 (Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 271 4e-71 AF097363_1(AF097363\|pid:none) Triticum aestivum heat shock prote... 271 5e-71 L35272_1(L35272\|pid:none) Glycine max heat shock protein (SB100)... 271 5e-71 CP000806_1939(CP000806\|pid:none) Cyanothece sp. ATCC 51142 circu... 271 5e-71 AJ970535_1(AJ970535\|pid:none) Triticum turgidum subsp. durum par... 270 8e-71 AF083327_1(AF083327\|pid:none) Zea mays 101 kDa heat shock protei... 269 1e-70 BT066296_1(BT066296\|pid:none) Zea mays full-length cDNA clone ZM... 269 1e-70
protein update	2009. 4. 8
PSORT	psg: 0.63 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 44.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for CHL204 is nuc
5' end seq. ID	CHL204F
5' end seq.	>CHL204F.Seq ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAA AACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATT AGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTAT ATTTGAAAAAGCTGGNGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGC CAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACA AGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGA CCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGG TGCAACCAAAGANNNNNNNNNN
Length of 5' end seq.	562
3' end seq. ID	CHL204Z
3' end seq.	>CHL204Z.Seq NNNNNNNNNNAATTGATATGAGTGAATATATGGANCAACATTCGGTTTCTCGTTTAATTG GTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAAGCCGTCAGAA GAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGA ATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAG ATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTG AACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCA TTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTG TCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCG TCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATT CAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTG AAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATC AAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAAC AACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAA TAAAAAATAAATAAAATNCTNNCTGTTTTTTTAAAA
Length of 3' end seq.	816
Connected seq. ID	CHL204P
Connected seq.	>CHL204P.Seq ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAA AACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATT AGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTAT ATTTGAAAAAGCTGGNGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGC CAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACA AGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGA CCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGG TGCAACCAAAGA----------AATTGATATGAGTGAATATATGGANCAACATTCGGTTT CTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTG AAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATC AACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAG GTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAAT ACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTA AAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCG ATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTC AATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACG ATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGA AACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAAT TAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTA TAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTA AATAAAAAAAAATAAAAAATAAATAAAATNCTNNCTGTTTTTTTAAAA
Length of connected seq.	1358
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas