>CHL176 (CHL176Q) /CSM/CH/CHL1-D/CHL176Q.Seq.d/
XXXXXXXXXXTTATATTAGTTATCCAATCGTATTGGAAGCTATTTTAGACTTTTTCTTTG
TATTGTTTGAATTTTTAAAAGCACAAGTTGGTGTTGTTTTTACCCAACAAACAATTTCAA
CATTTTTAGATATTTTAGGAGGTGATAATTTAAATCAATTATTAAGTAGTGGTAATGATA
CAGGTATTTCAATTATAAAGAAATTAATAGAGATTCTTACATTTATAGTTCAACAACCAG
GTAATAGTTTTGAAAGTTTATTAGGATCAACAATCGAATTTTCAATGGAGAAATTATATC
CAATGATTGCAAATACCTCATCAGTATTAAGATCACCATTTTTCACATTACTTTATAGCA
TATTGGATAATCATTGGAAACAATGTCAACAAATTCAAATCAATAGTATATTAACATCAT
TCCAATCAATTTTCAAACAAAATGATGTAAATTTATTCAAACAAAACTTGGATCATTTTG
AAAAATTAAATTCAAAATTAAAACTCTATGAAAAGATCTCTTCAATGGAACCTGTCTTTG
GTTGTTCTTTCATTAGTATGTTTTTCGATGTTTTAATCTCTGATACTCAATCAGTACACA
CTGATGATATCATTGTCACAATTTATAGATTCGCTTCTCTAAACTTTGATAAATTCTTTA
ATGAGTTTTTCACAACATTTTTGGTTCAAAAGTAA

---YISYPIVLEAILDFFFVLFEFLKAQVGVVFTQQTISTFLDILGGDNLNQLLSSGNDT
GISIIKKLIEILTFIVQQPGNSFESLLGSTIEFSMEKLYPMIANTSSVLRSPFFTLLYSI
LDNHWKQCQQIQINSILTSFQSIFKQNDVNLFKQNLDHFEKLNSKLKLYEKISSMEPVFG
CSFISMFFDVLISDTQSVHTDDIIVTIYRFASLNFDKFFNEFFTTFLVQK*

Frame A:
---YISYPIVLEAILDFFFVLFEFLKAQVGVVFTQQTISTFLDILGGDNLNQLLSSGNDT
GISIIKKLIEILTFIVQQPGNSFESLLGSTIEFSMEKLYPMIANTSSVLRSPFFTLLYSI
LDNHWKQCQQIQINSILTSFQSIFKQNDVNLFKQNLDHFEKLNSKLKLYEKISSMEPVFG
CSFISMFFDVLISDTQSVHTDDIIVTIYRFASLNFDKFFNEFFTTFLVQK*


Frame B:
---ilviqsywklf*tfslyclnf*khklvlflpnkqfqhf*if*evii*iny*vvvmiq
vfql*rn**rflhl*fnnqvivlkvy*dqqsnfqwrnyiq*lqiphqy*dhhfshyfiay
wiiignnvnkfksivy*hhsnqfsnkmm*iysnktwiilkn*iqn*nsmkrslqwnlslv
vlslvcfsmf*slilnqytlmislsqfidsll*tlinslmsfsqhfwfks


Frame C:
---y*lsnrigsyfrlflciv*ifkstswccfyptnnfnifryfrr**fksiik*w**yr
yfnykeinrdsyiyssttr**f*kfirinnrifngeiisndckylisikitifhitl*hi
g*sletmstnsnq*yiniipinfqtk*ckfiqtklgsf*kikfkiktl*kdlfngtclwl
ffh*yvfrcfnl*ysisth**yhchnl*irfskl**il**vfhnifgskv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL176 (CHL176Q) /CSM/CH/CHL1-D/CHL176Q.Seq.d/                       1358   0.0
VHK466 (VHK466Q) /CSM/VH/VHK4-C/VHK466Q.Seq.d/                       1096   0.0
AHA448 (AHA448Q) /CSM/AH/AHA4-B/AHA448Q.Seq.d/                       1082   0.0
VHN523 (VHN523Q) /CSM/VH/VHN5-A/VHN523Q.Seq.d/                       1072   0.0
AHE308 (AHE308Q) /CSM/AH/AHE3-A/AHE308Q.Seq.d/                        961   0.0
AHQ884 (AHQ884Q) /CSM/AH/AHQ8-D/AHQ884Q.Seq.d/                        850   0.0
SSI210 (SSI210Q) /CSM/SS/SSI2-A/SSI210Q.Seq.d/                        575   e-163
SSA896 (SSA896Q) /CSM/SS/SSA8-D/SSA896Q.Seq.d/                        323   2e-87
SHA444 (SHA444Q) /CSM/SH/SHA4-B/SHA444Q.Seq.d/                         40   0.044
AHQ875 (AHQ875Q) /CSM/AH/AHQ8-D/AHQ875Q.Seq.d/                         40   0.044

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-09  19
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   7e-08  23
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   1e-07  21
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   6e-07  18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   8e-07  16
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    36   9e-07  25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   5e-06  16
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   8e-06  25
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   2e-05  19
Z98857|Z98857.36 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone.    32   6e-05  16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CB2) RecName: Full=Exportin-6;          Short=Exp6;               413   e-114
BC144189_1(BC144189|pid:none) Homo sapiens exportin 6, mRNA (cDN...   127   4e-28
(Q6NTZ5) RecName: Full=Exportin-6-B;  &BC068807_1(BC068807|pid:n...   125   9e-28
(Q53I77) RecName: Full=Exportin-6-A;  &AJ865375_1(AJ865375|pid:n...   124   2e-27
BC084952_1(BC084952|pid:none) Xenopus laevis Exportin-6-A, mRNA ...   124   2e-27
BC044132_1(BC044132|pid:none) Danio rerio exportin 6, mRNA (cDNA...   122   8e-27
(Q8QHJ8) RecName: Full=Exportin-6;          Short=Exp6;  &AF3957...   121   2e-26
AK154709_1(AK154709|pid:none) Mus musculus NOD-derived CD11c +ve...   120   4e-26
BC004403_1(BC004403|pid:none) Homo sapiens exportin 6, mRNA (cDN...   120   4e-26
(Q924Z6) RecName: Full=Exportin-6;          Short=Exp6; AltName:...   120   4e-26

 psg: 0.75  gvh: 0.58  alm: 0.25  top: 0.60  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHL176 is nuc

>CHL176Z.Seq
NNNNNNNNNNTTATATTAGTTATCCAATCGTATTGGAAGCTATTTTAGACTTTTTCTTTG
TATTGTTTGAATTTTTAAAAGCACAAGTTGGTGTTGTTTTTACCCAACAAACAATTTCAA
CATTTTTAGATATTTTAGGAGGTGATAATTTAAATCAATTATTAAGTAGTGGTAATGATA
CAGGTATTTCAATTATAAAGAAATTAATAGAGATTCTTACATTTATAGTTCAACAACCAG
GTAATAGTTTTGAAAGTTTATTAGGATCAACAATCGAATTTTCAATGGAGAAATTATATC
CAATGATTGCAAATACCTCATCAGTATTAAGATCACCATTTTTCACATTACTTTATAGCA
TATTGGATAATCATTGGAAACAATGTCAACAAATTCAAATCAATAGTATATTAACATCAT
TCCAATCAATTTTCAAACAAAATGATGTAAATTTATTCAAACAAAACTTGGATCATTTTG
AAAAATTAAATTCAAAATTAAAACTCTATGAAAAGATCTCTTCAATGGAACCTGTCTTTG
GTTGTTCTTTCATTAGTATGTTTTTCGATGTTTTAATCTCTGATACTCAATCAGTACACA
CTGATGATATCATTGTCACAATTTATAGATTCGCTTCTCTAAACTTTGATAAATTCTTTA
ATGAGTTTTTCACAACATTTTTGGTTCAAAAGTAA