NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL106
Library CH
(Link to library)
Clone ID CHL106
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11389-1|Contig-U12354-1
Original site URL
Representative seq. ID CHL106P
(Link to Original site)
Representative DNA sequence 
>CHL106 (CHL106Q) /CSM/CH/CHL1-A/CHL106Q.Seq.d/
TATTAAGAAGTAGTAATGGTAGTAATGGCGATGATGGTATTTCAAGTAATTCAAATGAAT
CAATTGAACATGCAAATAATCTTTATCAATGTGGTCTTCAATATTTCCCAAATTCAGATT
TATTATGGATGGCATATTGTAACTTTTTATTCACAGTTAGAAAAGATAGACATATTGGTT
ATGCTGCATTAGAAAAACTTAGAAGAATGAAACCATCATTCGATGTTCGTTTCTTCATTT
ATCAACGTGATAAAGAAAGAGAACAAATTATGGATTCAGATTTACGTGGTCCAGAACATA
CAGGTAAAATTCAAGATTTTGTCAGTTACATGGAATTTAAAAAACTTTATTATGGTGCTA
AAAGACATCATGTTAAATGTTTAACATATATTAAAAAGTTTTGGGGTTTATTATTACATG
AAACAGTTGATCTTCATCGTTTATCANAXXXXXXXXXXGAAAATAGTATTAGTAATAATA
ATAAAGGATATGGTTGGGATGGAAAGAGTAAAAGAAATTTAAATAAGAAATCACTTAGAT
CAGTATTAAGACGTCTTCATTGGTCATATGTTTTAGCAATATTTTTATTATTTGGTTTTA
TTACAATGGGTTTGTGGGTCACTTATTCAGTTGTTCATGATAATACTCAATCTGGTTATG
TTTTGGGTAAAAGTTGTTCAAGATCATTGGATAGTCGTATCATCAATTATTATATAGCAG
AATTGTATACATTTGATAATGATGCAAATGAAAATGAAGCATTAGAAGCCGTACTTCAAT
TACAAAGTAATCATCAATCATTACCATACCTTGAAGATGTTAGACCACTAATGGAAGGTT
CTTATGGTTGTTGGATGCTTAATAAGAGTAATTGCATTACATCAGATTCAATCTATTACA
ATGATGTTAGTATTGGTCTCGATTGGTTGGTCGATCAATATACTAAACATTCCGTATCAC
TTGTAAATACCGATCCATCTTTACTATCAACAAGTCCAGAGTTGGGATGGATGCAAGCAA
TTGGCTCAGATGTAGTTTTCCAAGGTTTAGATACCGCAACATTCACTTATTTCCAATATT
ATCTATCTCAAAAAGATTGGGCTACAAAAGTTTTAACTTCAGTATTAGCCATTAGTTGTG
TATTATTATTAGTTATCCATTTACTATTATTTAGACCATTCATGAATCACCTAAGGATTC
AACACATTCATACTTTAGCACTTTTACGTTTAGCTNCCTGATNNATATAAGATTCAGGAG
GGTTAGNNATAAAGTTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
LRSSNGSNGDDGISSNSNESIEHANNLYQCGLQYFPNSDLLWMAYCNFLFTVRKDRHIGY
AALEKLRRMKPSFDVRFFIYQRDKEREQIMDSDLRGPEHTGKIQDFVSYMEFKKLYYGAK
RHHVKCLTYIKKFWGLLLHETVDLHRLS---

---ENSISNNNKGYGWDGKSKRNLNKKSLRSVLRRLHWSYVLAIFLLFGFITMGLWVTYS
VVHDNTQSGYVLGKSCSRSLDSRIINYYIAELYTFDNDANENEALEAVLQLQSNHQSLPY
LEDVRPLMEGSYGCWMLNKSNCITSDSIYYNDVSIGLDWLVDQYTKHSVSLVNTDPSLLS
TSPELGWMQAIGSDVVFQGLDTATFTYFQYYLSQKDWATKVLTSVLAISCVLLLVIHLLL
FRPFMNHLRIQHIHTLALLRLAX*xi*dsgglxikl
Translated Amino Acid sequence (All Frames) 
Frame A:
y*evvmvvmammvfqviqmnqlnmqiifinvvfnisqiqiyygwhivtfysqlekidilv
mlh*knlee*nhhsmfvssfinvikkenklwiqiyvvqniqvkfkilsvtwnlknfimvl
kdimlnv*hilksfgvyyymkqlifivyx---

---ENSISNNNKGYGWDGKSKRNLNKKSLRSVLRRLHWSYVLAIFLLFGFITMGLWVTYS
VVHDNTQSGYVLGKSCSRSLDSRIINYYIAELYTFDNDANENEALEAVLQLQSNHQSLPY
LEDVRPLMEGSYGCWMLNKSNCITSDSIYYNDVSIGLDWLVDQYTKHSVSLVNTDPSLLS
TSPELGWMQAIGSDVVFQGLDTATFTYFQYYLSQKDWATKVLTSVLAISCVLLLVIHLLL
FRPFMNHLRIQHIHTLALLRLAX*xi*dsgglxikl

Frame B:
ikk**w**wr*wyfk*fk*in*tck*slsmwssifpkfrfimdgil*lfihs*kr*tywl
ccirkt*knetiircsflhlst**rkrtnygfrftwsrtyr*nsrfcqlhgi*ktllwc*
ktsc*mfniy*kvlgfiit*ns*sssfix---

---kivlviiikdmvgmervkei*irnhldqy*dvfighmf*qyfyylvllqwvcgsliq
lfmiilnlvmfwvkvvqdhwivvssiii*qncihlimmqmkmkh*kpyfnykviinhyht
lkmldh*wkvlmvvgclirvialhqiqsitmmlvlvsigwsinilnipyhl*ipihlyyq
qvqswdgckqlaqm*fskv*ipqhslisniiylkkiglqkf*lqy*plvvyyy*lsiyyy
ldhs*it*gfntfil*hfyv*lpdxykiqeg*x*sy

Frame C:
LRSSNGSNGDDGISSNSNESIEHANNLYQCGLQYFPNSDLLWMAYCNFLFTVRKDRHIGY
AALEKLRRMKPSFDVRFFIYQRDKEREQIMDSDLRGPEHTGKIQDFVSYMEFKKLYYGAK
RHHVKCLTYIKKFWGLLLHETVDLHRLS---

---k*y*****riwlgwke*kkfk*eit*isiktsslvicfsnifiiwfyyngfvghlfs
cs**ysiwlcfg*klfkiig*syhqllysrivyi***ck*k*sirsrtsitk*ssiitip
*rc*ttngrflwllda**e*lhyirfnllq*c*ywsrlvgrsiy*tfritckyrsiftin
ksrvgmdasnwlrcsfprfryrnihlfpilsiskrlgyksfnfsish*lciiisypftii
*tihespkdsthsyfstftfsxlxxirfrrvxxkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL106 (CHL106Q) /CSM/CH/CHL1-A/CHL106Q.Seq.d/                       2438   0.0
VFM132 (VFM132Q) /CSM/VF/VFM1-B/VFM132Q.Seq.d/                       1132   0.0
SHI336 (SHI336Q) /CSM/SH/SHI3-B/SHI336Q.Seq.d/                        714   0.0
FC-IC0528 (FC-IC0528Q) /CSM/FC-IC/FC-IC0528Q.Seq.d/                   622   e-177
FC-IC0456 (FC-IC0456Q) /CSM/FC-IC/FC-IC0456Q.Seq.d/                   622   e-177
FC-IC1278 (FC-IC1278Q) /CSM/FC-IC/FC-IC1278Q.Seq.d/                   617   e-175
FC-IC0374 (FC-IC0374Q) /CSM/FC-IC/FC-IC0374Q.Seq.d/                   607   e-172
AHH667 (AHH667Q) /CSM/AH/AHH6-C/AHH667Q.Seq.d/                        394   e-108
VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/                         46   0.001
VSA276 (VSA276Q) /CSM/VS/VSA2-D/VSA276Q.Seq.d/                         42   0.021
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB187034|AB187034.1 Dictyostelium discoideum mRNA for TmcC, complete cds.  1540   0.0    2
AB187035|AB187035.1 Dictyostelium discoideum mRNA for TmcB, complete cds.   730   0.0    6
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    34   2e-07  21
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   4e-07  18
CR382401|CR382401.1 Plasmodium falciparum chromosome 6, complete sequence; segment 4/5.    42   5e-07  20
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   2e-06  15
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    38   5e-06  18
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   8e-06  20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   1e-05  16
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38   1e-05  12
dna update 2005. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB187035_1(AB187035|pid:none) Dictyostelium discoideum tmcB mRNA...   341   4e-92
EU826122_1(EU826122|pid:none) Chlamydomonas reinhardtii PAS doma...    56   2e-06
CR548612_184(CR548612|pid:none) Paramecium tetraurelia macronucl...    43   0.026
CR548612_74(CR548612|pid:none) Paramecium tetraurelia macronucle...    40   0.17
CP000489_1609(CP000489|pid:none) Paracoccus denitrificans PD1222...    37   1.4
AE014185_293(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.2
CP000822_1552(CP000822|pid:none) Citrobacter koseri ATCC BAA-895...    35   5.4
AM270193_66(AM270193|pid:none) Aspergillus niger contig An09c004...    35   5.4
AM180252_620(AM180252|pid:none) Lawsonia intracellularis PHE/MN1...    35   5.4
protein update 2009. 4. 8
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.13  top: 0.20  tms: 0.13  mit: 0.22  mip: 0.02
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: nuclear
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CHL106 is end
5' end seq. ID CHL106F
5' end seq. 
>CHL106F.Seq
TATTAAGAAGTAGTAATGGTAGTAATGGCGATGATGGTATTTCAAGTAATTCAAATGAAT
CAATTGAACATGCAAATAATCTTTATCAATGTGGTCTTCAATATTTCCCAAATTCAGATT
TATTATGGATGGCATATTGTAACTTTTTATTCACAGTTAGAAAAGATAGACATATTGGTT
ATGCTGCATTAGAAAAACTTAGAAGAATGAAACCATCATTCGATGTTCGTTTCTTCATTT
ATCAACGTGATAAAGAAAGAGAACAAATTATGGATTCAGATTTACGTGGTCCAGAACATA
CAGGTAAAATTCAAGATTTTGTCAGTTACATGGAATTTAAAAAACTTTATTATGGTGCTA
AAAGACATCATGTTAAATGTTTAACATATATTAAAAAGTTTTGGGGTTTATTATTACATG
AAACAGTTGATCTTCATCGTTTATCANANNNNNNNNNN
Length of 5' end seq. 458
3' end seq. ID CHL106Z
3' end seq. 
>CHL106Z.Seq
NNNNNNNNNNGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAG
TAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATA
TGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTC
AGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAAAGTTGTTCAAGATCATT
GGATAGTCGTATCATCAATTATTATATAGCAGAATTGTATACATTTGATAATGATGCAAA
TGAAAATGAAGCATTAGAAGCCGTACTTCAATTACAAAGTAATCATCAATCATTACCATA
CCTTGAAGATGTTAGACCACTAATGGAAGGTTCTTATGGTTGTTGGATGCTTAATAAGAG
TAATTGCATTACATCAGATTCAATCTATTACAATGATGTTAGTATTGGTCTCGATTGGTT
GGTCGATCAATATACTAAACATTCCGTATCACTTGTAAATACCGATCCATCTTTACTATC
AACAAGTCCAGAGTTGGGATGGATGCAAGCAATTGGCTCAGATGTAGTTTTCCAAGGTTT
AGATACCGCAACATTCACTTATTTCCAATATTATCTATCTCAAAAAGATTGGGCTACAAA
AGTTTTAACTTCAGTATTAGCCATTAGTTGTGTATTATTATTAGTTATCCATTTACTATT
ATTTAGACCATTCATGAATCACCTAAGGATTCAACACATTCATACTTTAGCACTTTTACG
TTTAGCTNCCTGATNNATATAAGATTCAGGAGGGTTAGNNATAAAGTTAT
Length of 3' end seq. 830
Connected seq. ID CHL106P
Connected seq. 
>CHL106P.Seq
TATTAAGAAGTAGTAATGGTAGTAATGGCGATGATGGTATTTCAAGTAATTCAAATGAAT
CAATTGAACATGCAAATAATCTTTATCAATGTGGTCTTCAATATTTCCCAAATTCAGATT
TATTATGGATGGCATATTGTAACTTTTTATTCACAGTTAGAAAAGATAGACATATTGGTT
ATGCTGCATTAGAAAAACTTAGAAGAATGAAACCATCATTCGATGTTCGTTTCTTCATTT
ATCAACGTGATAAAGAAAGAGAACAAATTATGGATTCAGATTTACGTGGTCCAGAACATA
CAGGTAAAATTCAAGATTTTGTCAGTTACATGGAATTTAAAAAACTTTATTATGGTGCTA
AAAGACATCATGTTAAATGTTTAACATATATTAAAAAGTTTTGGGGTTTATTATTACATG
AAACAGTTGATCTTCATCGTTTATCANA----------GAAAATAGTATTAGTAATAATA
ATAAAGGATATGGTTGGGATGGAAAGAGTAAAAGAAATTTAAATAAGAAATCACTTAGAT
CAGTATTAAGACGTCTTCATTGGTCATATGTTTTAGCAATATTTTTATTATTTGGTTTTA
TTACAATGGGTTTGTGGGTCACTTATTCAGTTGTTCATGATAATACTCAATCTGGTTATG
TTTTGGGTAAAAGTTGTTCAAGATCATTGGATAGTCGTATCATCAATTATTATATAGCAG
AATTGTATACATTTGATAATGATGCAAATGAAAATGAAGCATTAGAAGCCGTACTTCAAT
TACAAAGTAATCATCAATCATTACCATACCTTGAAGATGTTAGACCACTAATGGAAGGTT
CTTATGGTTGTTGGATGCTTAATAAGAGTAATTGCATTACATCAGATTCAATCTATTACA
ATGATGTTAGTATTGGTCTCGATTGGTTGGTCGATCAATATACTAAACATTCCGTATCAC
TTGTAAATACCGATCCATCTTTACTATCAACAAGTCCAGAGTTGGGATGGATGCAAGCAA
TTGGCTCAGATGTAGTTTTCCAAGGTTTAGATACCGCAACATTCACTTATTTCCAATATT
ATCTATCTCAAAAAGATTGGGCTACAAAAGTTTTAACTTCAGTATTAGCCATTAGTTGTG
TATTATTATTAGTTATCCATTTACTATTATTTAGACCATTCATGAATCACCTAAGGATTC
AACACATTCATACTTTAGCACTTTTACGTTTAGCTNCCTGATNNATATAAGATTCAGGAG
GGTTAGNNATAAAGTTAT
Length of connected seq. 1268
Full length Seq ID -
Full length Seq. -
Length of full length seq. -