NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK838
Library CH
(Link to library)
Clone ID CHK838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHK838P
(Link to Original site)
Representative DNA sequence 
>CHK838 (CHK838Q) /CSM/CH/CHK8-B/CHK838Q.Seq.d/
ATCATTGCCTTATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAA
ACCACATAAACATATCATTAATATTAATAATAAAAAAAAAAXXXXXXXXXXTCAATATGA
TCTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAG
TATTGACTTTAGTGAAGTTGCAAACTCTTTNTTTTTANATNTTCAAATTTGTATTACCGT
TCAAGTGGTTGGTAATTTACCTTGNGNTGGTTTATCACCATACTTGGGTGGTCAAGTTCC
AAATGCAGTATGGGTTGAACTTTTAATTCCNTTCTCTGATNTTCAAGTTTATCCAAATGC
TNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTAT
TNGANNGNTCTTCAGTGGATGTTGC
sequence update 2002.10.25
Translated Amino Acid sequence 
HCLINXLNNNHHHYNIVIINHINISLILIIKKK---

---QYDLLRLNXXFLHDQSYNNPNPSIDFSEVANSXFLXXQICITVQVVGNLPXXGLSPY
LGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQVQDHQGVFFIXXXFSGCC
Translated Amino Acid sequence (All Frames) 
Frame A:
iial*xi*itttiiii****tt*tyh*y***kk---

---si*sfeiefxxps*sil**sksky*l**scklfxfxxsnlyyrssgw*ftlxwfiti
lgwssskcsmg*tfnsxl*xsslskcxyq*yhfpnsstrsprcflyxxxlqwml

Frame B:
slpykxfk*qppsl*ysnnkphkhiininnkkk---

---QYDLLRLNXXFLHDQSYNNPNPSIDFSEVANSXFLXXQICITVQVVGNLPXXGLSPY
LGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQVQDHQGVFFIXXXFSGCC

Frame C:
HCLINXLNNNHHHYNIVIINHINISLILIIKKK---

---nmif*d*ixxsfminliiiqiqvltlvklqtlxfxxfkfvlpfkwlviylxxvyhht
wvvkfqmqyglnf*fxslxfkfiqmllsvvslsklkykitkvfslxxxssvdv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK838 (CHK838Q) /CSM/CH/CHK8-B/CHK838Q.Seq.d/                        531   e-150
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/                        500   e-140
SSI756 (SSI756Q) /CSM/SS/SSI7-C/SSI756Q.Seq.d/                        500   e-140
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        500   e-140
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                        500   e-140
CHF836 (CHF836Q) /CSM/CH/CHF8-B/CHF836Q.Seq.d/                        500   e-140
SSC357 (SSC357Q) /CSM/SS/SSC3-C/SSC357Q.Seq.d/                        494   e-139
CHF808 (CHF808Q) /CSM/CH/CHF8-A/CHF808Q.Seq.d/                        494   e-139
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                        478   e-134
CHJ505 (CHJ505Q) /CSM/CH/CHJ5-A/CHJ505Q.Seq.d/                        478   e-134
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ872445|AJ872445.1 Prunus persica EST, clone P1-18D03.            44   2.0    1
AJ827051|AJ827051.1 Prunus persica EST, clone S310I7.              44   2.0    1
AJ833407|AJ833407.1 Prunus persica EST, clone Pp-S4_EST1791.       44   2.0    1
AF290942|AF290942.4 Homo sapiens chromosome 8 clone CTD-3082P9 map 8p11-8p12, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42   8.1    1
AC019331|AC019331.4 Homo sapiens chromosome 8 clone RP11-104D16, WORKING DRAFT SEQUENCE, 16 unordered pieces.    42   8.1    1
AC102944|AC102944.2 Homo sapiens chromosome 8, clone CTD2-3082P9, complete sequence.    42   8.1    1
AC091560|AC091560.6 Homo sapiens chromosome 8, clone RP11-104D16, complete sequence.    42   8.1    1
CR239074|CR239074.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN32g20.    42   8.1    1
CR020888|CR020888.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN32g19.    42   8.1    1
dna update 2005. 2.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 442,530,840
protein update 2009. 4. 8
PSORT 

 psg: 0.90  gvh: 0.29  alm: 0.31  top: 0.60  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHK838 is nuc
5' end seq. ID CHK838F
5' end seq. 
>CHK838F.Seq
ATCATTGCCTTATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAA
ACCACATAAACATATCATTAATATTAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID CHK838Z
3' end seq. 
>CHK838Z.Seq
NNNNNNNNNNTCAATATGATCTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATCTT
ATAATAATCCAAATCCAAGTATTGACTTTAGTGAAGTTGCAAACTCTTTNTTTTTANATN
TTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGNGNTGGTTTATCACCAT
ACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCNTTCTCTGATN
TTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATC
ACCAAGGTGTTTTCTTTATTNGANNGNTCTTCAGTGGATGTTGC
Length of 3' end seq. 344
Connected seq. ID CHK838P
Connected seq. 
>CHK838P.Seq
ATCATTGCCTTATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAA
ACCACATAAACATATCATTAATATTAATAATAAAAAAAAAA----------TCAATATGA
TCTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAG
TATTGACTTTAGTGAAGTTGCAAACTCTTTNTTTTTANATNTTCAAATTTGTATTACCGT
TCAAGTGGTTGGTAATTTACCTTGNGNTGGTTTATCACCATACTTGGGTGGTCAAGTTCC
AAATGCAGTATGGGTTGAACTTTTAATTCCNTTCTCTGATNTTCAAGTTTATCCAAATGC
TNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTAT
TNGANNGNTCTTCAGTGGATGTTGC
Length of connected seq. 435
Full length Seq ID -
Full length Seq. -
Length of full length seq. -