CHK755
Library CH
(Link to library)
Clone ID CHK755
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12151-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHK755 (CHK755Q) /CSM/CH/CHK7-C/CHK755Q.Seq.d/
XXXXXXXXXXATTNATGGTNCAAATTCAACCGGGTTGGTGCCCANNCTCCAATTANTGGG
GATGATAAAAATAAATGNACNGNNAATTCATGTTCAAANTCAACNGGTTGTTGTCACNCC
CCAATTTCATGTAATGATAATAATCCATGTCCNGTAGATTCCTGTTCAAATTCAACTGGT
TGTTGTCACACTCCAATCAATGTTGATGATAATAATNCATGTACCGAAGATAAATGTACT
CAATCAGGTGGTGTAACTCATACTCCAATTGGATGTAATGATAATAATGCATGTACTGTA
GATTCATGTTCAAATTCAACTGGTTGTACTCATACACCAATGAAATGTGATGATAATAAT
CCATGTACAATTGACTCATGTTCAAATTCAACTGGTTGTGTCCATACCCCAATGAATTGC
GACGATGGTAACTTCTGTACTCTTGATTCATGTTGTTCAACTGGTTGTACTCATACACCA
ATTATTATTGATGACAATAACCCATGTACAGTCGACTCTTGTTGCAATTCAACCGGTGTC
GTCCATACTCCAGTGGATTGTAATGATAACAATGTCCTTACTTGTGATTACTGCAGTATC
AAACAAGGTGGTAAATGT
sequence update 2002. 9.10
Translated Amino Acid sequence
---XWXKFNRVGAXXPIXGDDKNKXTXNSCSXSTGCCHXPISCNDNNPCPVDSCSNSTGC
CHTPINVDDNNXCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGCTHTPMKCDDNNP
CTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPCTVDSCCNSTGVV
HTPVDCNDNNVLTCDYCSIKQGGKC


Translated Amino Acid sequence (All Frames)
Frame A:
---xmvqiqpgwcpxsnxwg**k*mxxxfmfkxnxllsxpnfm****smsxrflfkfnwl
lshsnqc****xmyrr*mysirwcnsysnwm****cmycrfmfkfnwlysytnem****s
myn*lmfkfnwlcpypnelrrw*llys*fmlfnwlysytnyy**q*pmysrlllqfnrcr
pyssgl***qcpyl*llqyqtrw*m


Frame B:
---XWXKFNRVGAXXPIXGDDKNKXTXNSCSXSTGCCHXPISCNDNNPCPVDSCSNSTGC
CHTPINVDDNNXCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGCTHTPMKCDDNNP
CTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPCTVDSCCNSTGVV
HTPVDCNDNNVLTCDYCSIKQGGKC


Frame C:
---xgxnstglvpxlqlxgmikinxxxihvqxqxvvvtpqfhvmiiihvx*ipvqiqlvv
vtlqsmlmiixhvpkinvlnqvv*lilqldvmiimhvl*ihvqiqlvvlihq*nvmiiih
vqlthvqiqlvvsipq*iatmvtsvllihvvqlvvlihqlllmtithvqstlvaiqpvss
ilqwivmitmsllvitavsnkvvn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHK755 (CHK755Q) /CSM/CH/CHK7-C/CHK755Q.Seq.d/ 1122 0.0
CFG520 (CFG520Q) /CSM/CF/CFG5-A/CFG520Q.Seq.d/ 1027 0.0
SHJ687 (SHJ687Q) /CSM/SH/SHJ6-D/SHJ687Q.Seq.d/ 999 0.0
CHK240 (CHK240Q) /CSM/CH/CHK2-B/CHK240Q.Seq.d/ 995 0.0
CHG408 (CHG408Q) /CSM/CH/CHG4-A/CHG408Q.Seq.d/ 991 0.0
CHR658 (CHR658Q) /CSM/CH/CHR6-C/CHR658Q.Seq.d/ 989 0.0
SHL392 (SHL392Q) /CSM/SH/SHL3-D/SHL392Q.Seq.d/ 983 0.0
CHP331 (CHP331Q) /CSM/CH/CHP3-B/CHP331Q.Seq.d/ 983 0.0
CHI627 (CHI627Q) /CSM/CH/CHI6-B/CHI627Q.Seq.d/ 983 0.0
CHL417 (CHL417Q) /CSM/CH/CHL4-A/CHL417Q.Seq.d/ 979 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 78 2e-23 7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 46 3e-06 12
AQ658455|AQ658455.1 Sheared DNA-9H12.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-9H12, genomic survey sequence. 30 0.042 4
AQ941716|AQ941716.1 Sheared DNA-52A1.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-52A1, genomic survey sequence. 30 0.047 4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.11 9
AF110406|AF110406.1 Trypanosoma brucei VSG 118 gene, partial sequence. 28 0.13 5
AC108662|AC108662.4 Rattus norvegicus clone CH230-260N19, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.30 2
BH125399|BH125399.1 RPCI-24-258J19.TJ RPCI-24 Mus musculus genomic clone RPCI-24-258J19 , DNA sequence. 28 0.42 4
AQ952345|AQ952345.1 Sheared DNA-32F4.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-32F4, genomic survey sequence. 28 0.42 4
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 32 0.62 11
dna update 2005. 2.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 393 e-108
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 393 e-108
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 244 1e-63
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 233 4e-60
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 220 3e-56
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 214 2e-54
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 126 4e-28
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 114 2e-24
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 112 1e-23
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 105 1e-21
protein update 2009. 5.19
PSORT

psg: 0.84 gvh: 0.43 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHK755 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHK755Z
3' end seq.
>CHK755Z.Seq
NNNNNNNNNNATTNATGGTNCAAATTCAACCGGGTTGGTGCCCANNCTCCAATTANTGGG
GATGATAAAAATAAATGNACNGNNAATTCATGTTCAAANTCAACNGGTTGTTGTCACNCC
CCAATTTCATGTAATGATAATAATCCATGTCCNGTAGATTCCTGTTCAAATTCAACTGGT
TGTTGTCACACTCCAATCAATGTTGATGATAATAATNCATGTACCGAAGATAAATGTACT
CAATCAGGTGGTGTAACTCATACTCCAATTGGATGTAATGATAATAATGCATGTACTGTA
GATTCATGTTCAAATTCAACTGGTTGTACTCATACACCAATGAAATGTGATGATAATAAT
CCATGTACAATTGACTCATGTTCAAATTCAACTGGTTGTGTCCATACCCCAATGAATTGC
GACGATGGTAACTTCTGTACTCTTGATTCATGTTGTTCAACTGGTTGTACTCATACACCA
ATTATTATTGATGACAATAACCCATGTACAGTCGACTCTTGTTGCAATTCAACCGGTGTC
GTCCATACTCCAGTGGATTGTAATGATAACAATGTCCTTACTTGTGATTACTGCAGTATC
AAACAAGGTGGTAAATGT
Length of 3' end seq. 618
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -