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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK742
Library CH
(Link to library)
Clone ID CHK742
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID CHK742P
(Link to Original site)
Representative DNA sequence 
>CHK742 (CHK742Q) /CSM/CH/CHK7-B/CHK742Q.Seq.d/
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAA
CACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXTCTCATTTCCATTCCAGT
TATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAA
GAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGG
TGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGT
TTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCA
CTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAA
TCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTT
ACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCA
AAATAAATTCTATANTGGTGATGGTGTTAGATTCACNCCATACAGTGCCACTCGTATT
sequence update 2002.10.25
Translated Amino Acid sequence 
fqkti*kkieniviyithkknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVH
QVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAW
LGASVAVLLLMESLSAFLHALRLHWVEFQNKFYXGDGVRFTPYSATRI
Translated Amino Acid sequence (All Frames) 
Frame A:
isknylkknreysyiyntqkkfishycfsliykq*yiynkhsii*f**kk---

---shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcs
sshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwcl
vrclccctftygipfcflars*tslgripk*ilxw*wc*ihxiqchsy

Frame B:
fqkti*kkieniviyithkknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVH
QVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAW
LGASVAVLLLMESLSAFLHALRLHWVEFQNKFYXGDGVRFTPYSATRI

Frame C:
fkklfkkk*ri*lyi*htkkihitllffinl*tiiyi**tlyhlilikkk---

---sfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfi
ksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg
*vplllyfylwnpfllsctlldfig*nskinsixvmvldsxhtvplv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK742 (CHK742Q) /CSM/CH/CHK7-B/CHK742Q.Seq.d/                        971   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        963   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        963   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        963   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                        963   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                        963   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                        963   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                        963   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                        963   0.0
CHN840 (CHN840Q) /CSM/CH/CHN8-B/CHN840Q.Seq.d/                        963   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   963   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   8e-14  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   1e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   6e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   1e-09  6
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   2e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   4e-09  3
BQ408812|BQ408812.1 GA__Ed0012A07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0012A07r, mRNA sequence.    72   1e-08  1
CO127208|CO127208.1 GR__Eb11K12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11K12 3', mRNA sequence.    72   1e-08  1
CO071051|CO071051.1 GR__Ea28H19.r GR__Ea Gossypium raimondii cDNA clone GR__Ea28H19 3', mRNA sequence.    72   1e-08  1
dna update 2005. 2.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   332   6e-90
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   332   6e-90
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   188   1e-46
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   186   6e-46
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   186   6e-46
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   186   6e-46
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   185   1e-45
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   184   2e-45
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   175   9e-43
AJ438978_1(AJ438978|pid:none) Mesembryanthemum crystallinum mRNA...   174   2e-42
protein update 2009. 4. 7
PSORT 

 psg: 0.85  gvh: 0.27  alm: 0.27  top: 0.60  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHK742 is nuc
5' end seq. ID CHK742F
5' end seq. 
>CHK742F.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAA
CACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 162
3' end seq. ID CHK742Z
3' end seq. 
>CHK742Z.Seq
NNNNNNNNNNTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGA
GATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATG
ATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTC
ATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATC
TTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTA
TTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTT
GGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACG
CTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATANTGGTGATGGTGTTAGAT
TCACNCCATACAGTGCCACTCGTATT
Length of 3' end seq. 506
Connected seq. ID CHK742P
Connected seq. 
>CHK742P.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAA
CACTCTATCATTTAATTTTAATAAAAAAAAAA----------TCTCATTTCCATTCCAGT
TATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAA
GAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGG
TGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGT
TTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCA
CTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAA
TCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTT
ACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCA
AAATAAATTCTATANTGGTGATGGTGTTAGATTCACNCCATACAGTGCCACTCGTATT
Length of connected seq. 648
Full length Seq ID -
Full length Seq. -
Length of full length seq. -