CHK723
Library CH
(Link to library)
Clone ID CHK723
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID CHK723P
(Link to Original site)
Representative DNA sequence
>CHK723 (CHK723Q) /CSM/CH/CHK7-A/CHK723Q.Seq.d/
AAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATT
AAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTTAA
ATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTAC
CAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAG
NGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXXXXXXX
XCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGG
TAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAAT
CACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGAC
CACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGAT
CGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAA
TCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGG
TAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGC
CGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTC
AATTGTAAATTCACCATGTAACTGTGAATGTGGATNAAGAGATTATAAATNATTCAACTC
CTCCTCTCCAAGACAATAAATTAAAAAATACAACTCATTC
sequence update 2002.10.25
Translated Amino Acid sequence
kqtknnnlkkq*fivk*kqlknh*lffspphykfqyfffklissfsvflhnhnqpyiitt
npiplqsyllnnyyllyyfxvylli*YLLASNKQKK---

---LKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVN
GKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPV
VKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGXRDYKX
FNSSSPRQ*ikkynsf


Translated Amino Acid sequence (All Frames)
Frame A:
ktnkkqqfkktiiyskvktikeslivffsssl*ipifff*infqlfcfftqsqptlyhyy
qpytitilfik*llfvvlf*xifvdlifisk*qtkkk---

---LKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVN
GKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPV
VKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGXRDYKX
FNSSSPRQ*ikkynsf

Frame B:
kqtknnnlkkq*fivk*kqlknh*lffspphykfqyfffklissfsvflhnhnqpyiitt
npiplqsyllnnyyllyyfxvylli*YLLASNKQKK---

---lnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlst
vrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpql
lkvmspqlavspqalllllnklpvlllllpkkllwllplkfgql*ihhvtvnvdxeiinx
stpplqdnklkntth

Frame C:
nkqktti*knnnl**sknn*ritncffllltinsniffln*fpaflffytittnpisllp
tlyhynliy*iiiicciilxyic*fniy*qvtnkkk---

---*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr
*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc
*r*clls*lshlkhccccstscrccccccpkscygccl*slvnckftm*l*mwxkrl*xi
qlllsktin*kiqli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/ 781 0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 781 0.0
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/ 781 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 781 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 781 0.0
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/ 781 0.0
SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/ 781 0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/ 781 0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 781 0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 781 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 781 0.0 6
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.067 1
AC022143|AC022143.7 Homo sapiens chromosome 19 clone CTD-2378H7, complete sequence. 48 0.26 1
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 48 0.26 1
AC008747|AC008747.5 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence. 48 0.26 1
AC110319|AC110319.5 Rattus norvegicus clone CH230-234D19, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 0.26 1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.26 1
AC113496|AC113496.4 Mus musculus chromosome 13 clone RP23-364G24 map 13, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 48 0.26 1
AL393003|AL393003.1 T7 end of clone AR0AA008B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 48 0.26 1
CK560251|CK560251.1 rswpb0_002530.y1 swp Bombyx mori cDNA, mRNA sequence. 46 1.0 1
dna update 2005. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 224 4e-57
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 6.9
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF... 33 9.1

protein update 2008.11. 2
PSORT

psg: 0.75 gvh: 0.54 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for CHK723 is cyt

5' end seq. ID CHK723F
5' end seq.
>CHK723F.Seq
AAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATT
AAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTTAA
ATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTAC
CAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAG
NGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 301
3' end seq. ID CHK723Z
3' end seq.
>CHK723Z.Seq
NNNNNNNNNNCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAA
CATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTT
AATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAA
CGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGT
TCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTC
AGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGT
TGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCA
ACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAA
AGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATNAAGAGATTATAAATN
ATTCAACTCCTCCTCTCCAAGACAATAAATTAAAAAATACAACTCATTC
Length of 3' end seq. 589
Connected seq. ID CHK723P
Connected seq.
>CHK723P.Seq
AAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATT
AAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTTAA
ATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTAC
CAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAG
NGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA---------
-CTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGG
TAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAAT
CACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGAC
CACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGAT
CGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAA
TCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGG
TAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGC
CGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTC
AATTGTAAATTCACCATGTAACTGTGAATGTGGATNAAGAGATTATAAATNATTCAACTC
CTCCTCTCCAAGACAATAAATTAAAAAATACAACTCATTC
Length of connected seq. 870
Full length Seq ID -
Full length Seq. -
Length of full length seq. -