CHK704
Library CH
(Link to library)
Clone ID CHK704
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15303-1|Contig-U15685-1
Original site URL
Representative seq. ID CHK704P
(Link to Original site)
Representative DNA sequence
>CHK704 (CHK704Q) /CSM/CH/CHK7-A/CHK704Q.Seq.d/
GCTTCTCCAATGCAAATGGTTCAATTGTTCGTTCAAATTGAAGCAGCTCATGACACTGTC
GATGAGTTGGGTAAATTAGGACTTATTCAATTTTTAGATGATAATGAACATGTTAATTTA
TTCCAAAGAAATTTCGTAAATGAAGTTAAACGTTGTGATGATATGGAAAAGAAATTAAAA
TTCTTTGAAGATCAAGTTAAAAAGGAACCAAAATTACAAAAACTTTTACCAGATAATATG
TTATCAGTTGTTGATGATGATTCACAAATGGATGAATTGGAAGGTCGTTTCGATGAATTA
GAATCTGAATTAAAACAAGTTAATGCCAATCAAGAGACACTCCAAAGAAATTACAATGAA
TTAATTCAATTACGTCATGTATTGACCAAGGATTCAGTATTCTTCCAAGAGAATCCAAAT
TTGATCGAAGGTGAAGGTCATGAACATAGCGCACGTAGTCCATTGCTTGCAGAGGATCAA
CACGTTTCAGAAGTTGCCAAXXXXXXXXXXGGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGA
ATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATT
CTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTC
sequence update 2002.10.25
Translated Amino Acid sequence
ASPMQMVQLFVQIEAAHDTVDELGKLGLIQFLDDNEHVNLFQRNFVNEVKRCDDMEKKLK
FFEDQVKKEPKLQKLLPDNMLSVVDDDSQMDELEGRFDELESELKQVNANQETLQRNYNE
LIQLRHVLTKDSVFFQENPNLIEGEGHEHSARSPLLAEDQHVSEVA---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRIL


Translated Amino Acid sequence (All Frames)
Frame A:
ASPMQMVQLFVQIEAAHDTVDELGKLGLIQFLDDNEHVNLFQRNFVNEVKRCDDMEKKLK
FFEDQVKKEPKLQKLLPDNMLSVVDDDSQMDELEGRFDELESELKQVNANQETLQRNYNE
LIQLRHVLTKDSVFFQENPNLIEGEGHEHSARSPLLAEDQHVSEVA---

---gshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slc
ssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwc
lvrclccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysf

Frame B:
llqckwfncsfklkqlmtlsmswvn*dlfnf*mimnmliyskeis*mklnvvmiwkrn*n
slkiklkrnqnyknfyqiicyqllmmihkwmnwkvvsmn*nln*nklmpikrhskeitmn
*fnyvmy*priqysskriqi*skvkvmniahvvhclqrintfqklp---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRIL

Frame C:
fsnangsivrsn*sss*hcr*vg*irtysifr***tc*fipkkfrk*s*tl**ygkeiki
l*rss*kgtkitktftr*yvisc***ftng*igrsfr*iri*ikts*cqsrdtpkklq*i
nsitscidqgfsilpreskfdrr*rs*t*rt*siacrgstrfrscq---

---lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslf
iksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvl
g*vplllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvplvff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHK704 (CHK704Q) /CSM/CH/CHK7-A/CHK704Q.Seq.d/ 1951 0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/ 999 0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/ 999 0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/ 999 0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/ 999 0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/ 999 0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/ 999 0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/ 999 0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/ 999 0.0
CHM455 (CHM455Q) /CSM/CH/CHM4-C/CHM455Q.Seq.d/ 999 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds. 999 0.0 2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence. 72 2e-13 2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence. 80 9e-11 1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence. 80 9e-11 1
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence. 54 9e-09 3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence. 54 2e-08 3
CO114093|CO114093.1 GR__Eb015A17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 5', mRNA sequence. 72 2e-08 1
CO124018|CO124018.1 GR__Eb06J21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb06J21 3', mRNA sequence. 72 2e-08 1
CO070907|CO070907.1 GR__Ea28D10.f GR__Ea Gossypium raimondii cDNA clone GR__Ea28D10 5', mRNA sequence. 72 2e-08 1
CO114094|CO114094.1 GR__Eb015A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 3', mRNA sequence. 72 2e-08 1
dna update 2005. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ... 339 1e-91
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot... 339 1e-91
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ... 191 4e-47
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso... 186 1e-45
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo... 186 1e-45
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo... 186 1e-45
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo... 185 2e-45
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c... 184 3e-45
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 177 5e-43
AJ438978_1(AJ438978|pid:none) Mesembryanthemum crystallinum mRNA... 177 5e-43
protein update 2009. 4. 7
PSORT

psg: 0.86 gvh: 0.42 alm: 0.25 top: 0.80 tms: 0.20 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

24.0 %: endoplasmic reticulum
24.0 %: plasma membrane
16.0 %: vacuolar
12.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for CHK704 is end

5' end seq. ID CHK704F
5' end seq.
>CHK704F.Seq
GCTTCTCCAATGCAAATGGTTCAATTGTTCGTTCAAATTGAAGCAGCTCATGACACTGTC
GATGAGTTGGGTAAATTAGGACTTATTCAATTTTTAGATGATAATGAACATGTTAATTTA
TTCCAAAGAAATTTCGTAAATGAAGTTAAACGTTGTGATGATATGGAAAAGAAATTAAAA
TTCTTTGAAGATCAAGTTAAAAAGGAACCAAAATTACAAAAACTTTTACCAGATAATATG
TTATCAGTTGTTGATGATGATTCACAAATGGATGAATTGGAAGGTCGTTTCGATGAATTA
GAATCTGAATTAAAACAAGTTAATGCCAATCAAGAGACACTCCAAAGAAATTACAATGAA
TTAATTCAATTACGTCATGTATTGACCAAGGATTCAGTATTCTTCCAAGAGAATCCAAAT
TTGATCGAAGGTGAAGGTCATGAACATAGCGCACGTAGTCCATTGCTTGCAGAGGATCAA
CACGTTTCAGAAGTTGCCAANNNNNNNNNN
Length of 5' end seq. 510
3' end seq. ID CHK704Z
3' end seq.
>CHK704Z.Seq
NNNNNNNNNNGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGA
AGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATG
ATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTG
TTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTT
ATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAAC
GTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTG
CTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGC
ACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTA
GATTCATTCCATACAGTGCCACTCGTATTCTTTC
Length of 3' end seq. 514
Connected seq. ID CHK704P
Connected seq.
>CHK704P.Seq
GCTTCTCCAATGCAAATGGTTCAATTGTTCGTTCAAATTGAAGCAGCTCATGACACTGTC
GATGAGTTGGGTAAATTAGGACTTATTCAATTTTTAGATGATAATGAACATGTTAATTTA
TTCCAAAGAAATTTCGTAAATGAAGTTAAACGTTGTGATGATATGGAAAAGAAATTAAAA
TTCTTTGAAGATCAAGTTAAAAAGGAACCAAAATTACAAAAACTTTTACCAGATAATATG
TTATCAGTTGTTGATGATGATTCACAAATGGATGAATTGGAAGGTCGTTTCGATGAATTA
GAATCTGAATTAAAACAAGTTAATGCCAATCAAGAGACACTCCAAAGAAATTACAATGAA
TTAATTCAATTACGTCATGTATTGACCAAGGATTCAGTATTCTTCCAAGAGAATCCAAAT
TTGATCGAAGGTGAAGGTCATGAACATAGCGCACGTAGTCCATTGCTTGCAGAGGATCAA
CACGTTTCAGAAGTTGCCAA----------GGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGA
ATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATT
CTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTC
Length of connected seq. 1004
Full length Seq ID -
Full length Seq. -
Length of full length seq. -