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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK615
Library CH
(Link to library)
Clone ID CHK615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHK615P
(Link to Original site)
Representative DNA sequence 
>CHK615 (CHK615Q) /CSM/CH/CHK6-A/CHK615Q.Seq.d/
TATTTTATAAAAGTTATCTTTACACATTTTTACCAATAATCACTGTAATGGAAGGAGTAC
TTAATGATAATGGTGGTAATTTAACTTTCACAGGAGACCATCTAAGTGTGAATCCAAGCA
CTACAATAAGTGGTCATTTTGGTGGTAAACCTATTAGTTGTTTCGCTGGTACTTCAAAAA
GTGTAATATGTTCCATACCAAGTCGTTCAGAATATGGTGGTTCTGGTTATGATGTTCCTC
TTAATGTAACTATTGGTAAATACACAACAAATACAATTAAAATATCATATGATCTTCCAT
TAATTCAAGGTGTTTCACAAAGGGGTACTTCACAGATTTTCAATGTATCTGGTGTATATT
TCTCTGGTGTAATTAGTATGACAATAATTACTGGTGCGAATATTAAAACTAATATTTTGA
AAAAGCCTACTCCAACTTTAGAAGAACCTGGATTTTTTATTGAAAGTAATAATACCATTT
TCATATTCCTACCAAATAATACACAACCTGGTTTTATGAATCTTATTGTTGGTGATGGTG
GTAGTAAATCATTTACATCTCCAAGATATAATTTCAAGATCACTCCAACCATTACTGCTG
XXXXXXXXXXGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTT
GCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGGTTGAAAAATA
TATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACT
TCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCC
AAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCAT
TAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAAT
ATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTA
TATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTT
TTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAA
TTACTCAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
FYKSYLYTFLPIITVMEGVLNDNGGNLTFTGDHLSVNPSTTISGHFGGKPISCFAGTSKS
VICSIPSRSEYGGSGYDVPLNVTIGKYTTNTIKISYDLPLIQGVSQRGTSQIFNVSGVYF
SGVISMTIITGANIKTNILKKPTPTLEEPGFFIESNNTIFIFLPNNTQPGFMNLIVGDGG
SKSFTSPRYNFKITPTITA---

---ENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQG*kiy*reksqksi*is**sts*ts
*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnni
qf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*l
ln
Translated Amino Acid sequence (All Frames) 
Frame A:
yfikvifthfyq*sl*wkeylmimvvi*lsqeti*v*iqalq*vvilvvnllvvslvlqk
v*yvpyqvvqnmvvlvmmfllm*llvntqqiqlkyhmifh*fkvfhkgvlhrfsmylvyi
slv*lv*q*llvrilklif*ksllql*knldfllkviipfsysyqiihnlvl*illlvmv
vvnhlhlqdiisrslqplll---

---vkishqdfqmkcisvllql*yf*h*fslllkhrvekyieerrarkafrsvdnlrlkl
rekhaaeiakhysfgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfpnsnpii
snsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkann
ysi

Frame B:
il*klslhiftnnhcngrst***ww*fnfhrrpskceskhynkwsfww*ty*lfrwyfkk
cnmfhtksfriwwfwl*css*cnyw*ihnkyn*nii*ssinsrcftkgyftdfqciwcif
lwcn*ydnnywcey*n*yfekaysnfrrtwify*k**yhfhiptk*yttwfyesycw*ww
**iiyiski*fqdhsnhyc---

---*k*virisk*nvyryccnynifsinflcy*ntglknilkreepekhldqliiyvlnf
vrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*y
piln*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqii
tql

Frame C:
FYKSYLYTFLPIITVMEGVLNDNGGNLTFTGDHLSVNPSTTISGHFGGKPISCFAGTSKS
VICSIPSRSEYGGSGYDVPLNVTIGKYTTNTIKISYDLPLIQGVSQRGTSQIFNVSGVYF
SGVISMTIITGANIKTNILKKPTPTLEEPGFFIESNNTIFIFLPNNTQPGFMNLIVGDGG
SKSFTSPRYNFKITPTITA---

---ENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQG*kiy*reksqksi*is**sts*ts
*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnni
qf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*l
ln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK615 (CHK615Q) /CSM/CH/CHK6-A/CHK615Q.Seq.d/                       2081   0.0
AHK772 (AHK772Q) /CSM/AH/AHK7-C/AHK772Q.Seq.d/                        995   0.0
AFJ278 (AFJ278Q) /CSM/AF/AFJ2-D/AFJ278Q.Seq.d/                        922   0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                        916   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                        916   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                        916   0.0
SHL244 (SHL244Q) /CSM/SH/SHL2-B/SHL244Q.Seq.d/                        916   0.0
SHL202 (SHL202Q) /CSM/SH/SHL2-A/SHL202Q.Seq.d/                        916   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                        916   0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/                        916   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   131   e-105  20
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   6e-11  24
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   5e-07  22
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    36   3e-06  32
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            32   7e-06  27
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4.    36   6e-05  15
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   7e-05  17
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   0.001  26
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC.    34   0.002  23
AR584244|AR584244.1 Sequence 1 from patent US 6797466.             32   0.002  29
dna update 2005. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   405   e-111
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   405   e-111
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   405   e-111
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   405   e-111
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   290   6e-77
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   288   2e-76
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   288   2e-76
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   286   1e-75
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   286   1e-75
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   285   2e-75
protein update 2009. 4. 7
PSORT 

 psg: 0.96  gvh: 0.39  alm: 0.08  top: 0.67  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHK615 is cyt
5' end seq. ID CHK615F
5' end seq. 
>CHK615F.Seq
TATTTTATAAAAGTTATCTTTACACATTTTTACCAATAATCACTGTAATGGAAGGAGTAC
TTAATGATAATGGTGGTAATTTAACTTTCACAGGAGACCATCTAAGTGTGAATCCAAGCA
CTACAATAAGTGGTCATTTTGGTGGTAAACCTATTAGTTGTTTCGCTGGTACTTCAAAAA
GTGTAATATGTTCCATACCAAGTCGTTCAGAATATGGTGGTTCTGGTTATGATGTTCCTC
TTAATGTAACTATTGGTAAATACACAACAAATACAATTAAAATATCATATGATCTTCCAT
TAATTCAAGGTGTTTCACAAAGGGGTACTTCACAGATTTTCAATGTATCTGGTGTATATT
TCTCTGGTGTAATTAGTATGACAATAATTACTGGTGCGAATATTAAAACTAATATTTTGA
AAAAGCCTACTCCAACTTTAGAAGAACCTGGATTTTTTATTGAAAGTAATAATACCATTT
TCATATTCCTACCAAATAATACACAACCTGGTTTTATGAATCTTATTGTTGGTGATGGTG
GTAGTAAATCATTTACATCTCCAAGATATAATTTCAAGATCACTCCAACCATTACTGCTG
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID CHK615Z
3' end seq. 
>CHK615Z.Seq
NNNNNNNNNNGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTT
GCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGGTTGAAAAATA
TATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACT
TCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCC
AAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCAT
TAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAAT
ATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTA
TATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTT
TTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAA
TTACTCAATTA
Length of 3' end seq. 551
Connected seq. ID CHK615P
Connected seq. 
>CHK615P.Seq
TATTTTATAAAAGTTATCTTTACACATTTTTACCAATAATCACTGTAATGGAAGGAGTAC
TTAATGATAATGGTGGTAATTTAACTTTCACAGGAGACCATCTAAGTGTGAATCCAAGCA
CTACAATAAGTGGTCATTTTGGTGGTAAACCTATTAGTTGTTTCGCTGGTACTTCAAAAA
GTGTAATATGTTCCATACCAAGTCGTTCAGAATATGGTGGTTCTGGTTATGATGTTCCTC
TTAATGTAACTATTGGTAAATACACAACAAATACAATTAAAATATCATATGATCTTCCAT
TAATTCAAGGTGTTTCACAAAGGGGTACTTCACAGATTTTCAATGTATCTGGTGTATATT
TCTCTGGTGTAATTAGTATGACAATAATTACTGGTGCGAATATTAAAACTAATATTTTGA
AAAAGCCTACTCCAACTTTAGAAGAACCTGGATTTTTTATTGAAAGTAATAATACCATTT
TCATATTCCTACCAAATAATACACAACCTGGTTTTATGAATCTTATTGTTGGTGATGGTG
GTAGTAAATCATTTACATCTCCAAGATATAATTTCAAGATCACTCCAACCATTACTGCTG
----------GTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTT
GCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGGTTGAAAAATA
TATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACT
TCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCC
AAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCAT
TAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAAT
ATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTA
TATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTT
TTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAA
TTACTCAATTA
Length of connected seq. 1141
Full length Seq ID -
Full length Seq. -
Length of full length seq. -