>CHK605 (CHK605Q) /CSM/CH/CHK6-A/CHK605Q.Seq.d/
ACTGTTGGCCTACTGGTTTTATTAAATAATAATTTATCTACATTTTATATATTTTTTTTT
TTNAGNACTACATAACCCACCTTTAAAAAAAAAAATAAAAAAAATAAAAAAAATCCCNAT
XXXXXXXXXX

llaywfy*IIIYLHFIYFFFXXLHNPPLKKKIKKIKKIP---

Frame A:
tvgllvllnnnlstfyifffxxtt*ptfkkknkknkknp---


Frame B:
llaywfy*IIIYLHFIYFFFXXLHNPPLKKKIKKIKKIP---


Frame C:
cwptgfik**fiyilyifffxxyithl*kkk*kk*kksx---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK605 (CHK605Q) /CSM/CH/CHK6-A/CHK605Q.Seq.d/                        101   2e-21
SHD540 (SHD540Q) /CSM/SH/SHD5-B/SHD540Q.Seq.d/                         54   5e-07
CHR791 (CHR791Q) /CSM/CH/CHR7-D/CHR791Q.Seq.d/                         54   5e-07
CHR486 (CHR486Q) /CSM/CH/CHR4-D/CHR486Q.Seq.d/                         54   5e-07
CHR284 (CHR284Q) /CSM/CH/CHR2-D/CHR284Q.Seq.d/                         54   5e-07
CHQ754 (CHQ754Q) /CSM/CH/CHQ7-C/CHQ754Q.Seq.d/                         54   5e-07
CHO216 (CHO216Q) /CSM/CH/CHO2-A/CHO216Q.Seq.d/                         54   5e-07
CHN772 (CHN772Q) /CSM/CH/CHN7-C/CHN772Q.Seq.d/                         54   5e-07
CHN417 (CHN417Q) /CSM/CH/CHN4-A/CHN417Q.Seq.d/                         54   5e-07
CHN408 (CHN408Q) /CSM/CH/CHN4-A/CHN408Q.Seq.d/                         54   5e-07

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC018438|AC018438.2 Homo sapiens chromosome 8 clone RP11-138G3 map 8, LOW-PASS SEQUENCESAMPLING.    40   0.001  2
AC094422|AC094422.5 Rattus norvegicus clone CH230-3K14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.004  2
BD099275|BD099275.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    48   0.034  1
BD019337|BD019337.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    48   0.034  1
AL365402|AL365402.17 Human DNA sequence from clone RP11-445K1 on chromosome 1q31.1-31.3.    48   0.034  1
AC074364|AC074364.5 Homo sapiens chromosome 1 clone RP11-113I24, WORKING DRAFT SEQUENCE, 24 unordered pieces.    48   0.034  1
BM604216|BM604216.1 17000687073620 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449730833 5', mRNA sequence.    32   0.10   2
BM639909|BM639909.1 17000687625732 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449621837 5', mRNA sequence.    32   0.13   2
BM626100|BM626100.1 17000687494209 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449670357 5', mRNA sequence.    32   0.14   2
BM587162|BM587162.1 17000668409583 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600448420536 5', mRNA sequence.    32   0.15   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 61,009,353

 psg: 0.93  gvh: 0.33  alm: 0.39  top: 0.93  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.22  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHK605 is nuc

>CHK605F.Seq
ACTGTTGGCCTACTGGTTTTATTAAATAATAATTTATCTACATTTTATATATTTTTTTTT
TTNAGNACTACATAACCCACCTTTAAAAAAAAAAATAAAAAAAATAAAAAAAATCCCNAT
NNNNNNNNNN