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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK602
Library CH
(Link to library)
Clone ID CHK602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID CHK602P
(Link to Original site)
Representative DNA sequence 
>CHK602 (CHK602Q) /CSM/CH/CHK6-A/CHK602Q.Seq.d/
AGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAG
CAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCT
CAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTA
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTXXXXXXX
XXXGTTAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATAGTAGCATGATTTAGTACG
AGAGGAACTGTCATGCCGGATCACTGGTNTGTAGGTTTATTTGACAAAATAGTGACCTGC
CGNTACCATCCGTTGGATAATGGCTGAACGCCTNTAAGTCAGAATCCATTNTANAAACGC
AAACCAAATGCTTTANAGTGTGAATGTTATAGGTAACATTAGGTTGTTGGTGGGGGACCA
CTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTG
TGGTGGGTGGCTAAATTNTAATTTATATCCTCGTTCCGCTCAACTNTTNGATTGTAGACG
ACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
GCTTTTCCATTAGTTCTTAAAACNTTTTATTTAAATAATATAATAAAATTATATTACAAT
TAATTCNTTTTTTTTTTCAATAAATATACTTTCATACTTTATAATAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
d*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf*
n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgi
r*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVV---

---VSFTLLLSIVXVIVA*fstrgtvmpdhwxvglfdkivtcryhpldng*tpxsqnpxx
krkpnalxcecyr*h*vvgggplstlnhminrcytavsfrllwwvakx*fissfrstxxl
*ttik*trccklpssvqlrgveafplvlktfylnniiklyyn*fxfffnkytfilynn
Translated Amino Acid sequence (All Frames) 
Frame A:
rlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tggyhfnslnwil
klnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsry
plrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewsc---

---VSFTLLLSIVXVIVA*fstrgtvmpdhwxvglfdkivtcryhpldng*tpxsqnpxx
krkpnalxcecyr*h*vvgggplstlnhminrcytavsfrllwwvakx*fissfrstxxl
*ttik*trccklpssvqlrgveafplvlktfylnniiklyyn*fxfffnkytfilynn

Frame B:
d*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf*
n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgi
r*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVV---

---lvlpyccqlfx***hdlvreelscritgx*vyltk**paxtirwimaerl*vrihxx
nanqmlxsvnvignirllvgdhfql*ti*liavtlqfpsgycggwlnxnlyprsaqlxdc
rrlsnelgavsfrvafsyeglrlfh*flkxfi*ii**nyitinsfffsinilsyfii

Frame C:
tnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqtlngwvsf*ft*ldfk
iklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvs
akecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvels---

---*fyptvvnclxnssmi*yernchagslvcrfi*qnsdlpxpsvg*wlnaxksesixx
tqtkcfxv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*ixiyilvplnxxiv
ddyqmn*vl*ase*rsvtrg*gfsiss*nxlfk*ynkiilqlixfffq*iyfhtl**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK602 (CHK602Q) /CSM/CH/CHK6-A/CHK602Q.Seq.d/                       1927   0.0
VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/                       1057   0.0
VHJ843 (VHJ843Q) /CSM/VH/VHJ8-B/VHJ843Q.Seq.d/                       1057   0.0
VHG320 (VHG320Q) /CSM/VH/VHG3-A/VHG320Q.Seq.d/                       1057   0.0
VHC345 (VHC345Q) /CSM/VH/VHC3-B/VHC345Q.Seq.d/                       1057   0.0
SHH833 (SHH833Q) /CSM/SH/SHH8-B/SHH833Q.Seq.d/                       1057   0.0
SHG223 (SHG223Q) /CSM/SH/SHG2-A/SHG223Q.Seq.d/                       1057   0.0
AHE287 (AHE287Q) /CSM/AH/AHE2-D/AHE287Q.Seq.d/                       1057   0.0
VHM752 (VHM752Q) /CSM/VH/VHM7-C/VHM752Q.Seq.d/                       1053   0.0
VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/                       1047   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1057   0.0    1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1057   0.0    6
AC136838|AC136838.30 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 10 unordered pieces.   141   e-147  12
AC121240|AC121240.27 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 ordered pieces.   141   e-147  12
AP008160|AP008160.1 Lotus corniculatus var. japonicus genomic DNA, clone:LjT31N05, TM1576.   141   e-116  7
AY048158|AY048158.1 Saccharomyces unisporus NRRL Y-1556 26S ribosomal RNA gene, partial sequence.   168   2e-93  6
AY048154|AY048154.1 Saccharomyces cerevisiae NRRL Y-12632 26S ribosomal RNA gene, partial sequence.   172   3e-92  6
U09238|U09238.1 Endomyces fibuliger 8014 26S rRNA gene, complete sequence.   172   6e-92  6
AJ864475|AJ864475.1 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1.   182   2e-91  6
J01355|J01355.1 S.cerevisiae 25S rRNA gene and flanks.   172   3e-91  6
dna update 2005. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   7e-14
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.005
protein update 2009. 4. 7
PSORT 

 psg: 0.96  gvh: 0.55  alm: 0.17  top: 0.33  tms: 0.07  mit: 0.55  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 24.0 %: Golgi
	 16.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for CHK602 is mit
5' end seq. ID CHK602F
5' end seq. 
>CHK602F.Seq
AGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAG
CAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCT
CAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTA
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTNNNNNNN
NNN
Length of 5' end seq. 543
3' end seq. ID CHK602Z
3' end seq. 
>CHK602Z.Seq
NNNNNNNNNNGTTAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATAGTAGCATGATT
TAGTACGAGAGGAACTGTCATGCCGGATCACTGGTNTGTAGGTTTATTTGACAAAATAGT
GACCTGCCGNTACCATCCGTTGGATAATGGCTGAACGCCTNTAAGTCAGAATCCATTNTA
NAAACGCAAACCAAATGCTTTANAGTGTGAATGTTATAGGTAACATTAGGTTGTTGGTGG
GGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCG
GTTATTGTGGTGGGTGGCTAAATTNTAATTTATATCCTCGTTCCGCTCAACTNTTNGATT
GTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGCTTTTCCATTAGTTCTTAAAACNTTTTATTTAAATAATATAATAAAATTATA
TTACAATTAATTCNTTTTTTTTTTCAATAAATATACTTTCATACTTTATAATAAT
Length of 3' end seq. 535
Connected seq. ID CHK602P
Connected seq. 
>CHK602P.Seq
AGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAG
CAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCT
CAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTA
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCT-------
---GTTAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATAGTAGCATGATTTAGTACG
AGAGGAACTGTCATGCCGGATCACTGGTNTGTAGGTTTATTTGACAAAATAGTGACCTGC
CGNTACCATCCGTTGGATAATGGCTGAACGCCTNTAAGTCAGAATCCATTNTANAAACGC
AAACCAAATGCTTTANAGTGTGAATGTTATAGGTAACATTAGGTTGTTGGTGGGGGACCA
CTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTG
TGGTGGGTGGCTAAATTNTAATTTATATCCTCGTTCCGCTCAACTNTTNGATTGTAGACG
ACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
GCTTTTCCATTAGTTCTTAAAACNTTTTATTTAAATAATATAATAAAATTATATTACAAT
TAATTCNTTTTTTTTTTCAATAAATATACTTTCATACTTTATAATAAT
Length of connected seq. 1058
Full length Seq ID -
Full length Seq. -
Length of full length seq. -