CHK573
Library CH
(Link to library)
Clone ID CHK573
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14379-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHK573 (CHK573Q) /CSM/CH/CHK5-D/CHK573Q.Seq.d/
XXXXXXXXXXTTAAAAAAAAAANAAAGNATGGATGAATACACAAACGATTTTCCATGGAT
GTATATTGTNATATGTTTAACAACAATAATATCGGTGACCATATTTTACATNCTGGNTTC
ATTTTTCATAAAAAGATATAGAAATAGAAAGAATGAAGAATTGGGCCATGCATTAATAAC
CAACCCTAGTTTATACTCCTCATTATAATTCTCAACCTATAATAAAAGNA
sequence update 2002. 9.10
Translated Amino Acid sequence
---KKKXXMDEYTNDFPWMYIVICLTTIISVTIFYXLXSFFIKRYRNRKNEELGHALITN
PSLYSSL*fstynkx


Translated Amino Acid sequence (All Frames)
Frame A:
---*kkxkxwmntqtifhgcilxyv*qq*yr*pyftxwxhfs*kdieiermknwamh**p
tlvytphynsqpiikx


Frame B:
---kkkxkxg*ihkrfsmdvycxmfnnnnigdhilhxgfifhkki*k*ke*rigpcinnq
p*filliiilnl**k


Frame C:
---KKKXXMDEYTNDFPWMYIVICLTTIISVTIFYXLXSFFIKRYRNRKNEELGHALITN
PSLYSSL*fstynkx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHK573 (CHK573Q) /CSM/CH/CHK5-D/CHK573Q.Seq.d/ 383 e-106
SSE237 (SSE237Q) /CSM/SS/SSE2-B/SSE237Q.Seq.d/ 347 4e-95
SSE769 (SSE769Q) /CSM/SS/SSE7-C/SSE769Q.Seq.d/ 339 1e-92
SSC479 (SSC479Q) /CSM/SS/SSC4-D/SSC479Q.Seq.d/ 36 0.22
SFK838 (SFK838Q) /CSM/SF/SFK8-B/SFK838Q.Seq.d/ 36 0.22
SFG145 (SFG145Q) /CSM/SF/SFG1-B/SFG145Q.Seq.d/ 36 0.22
SFB423 (SFB423Q) /CSM/SF/SFB4-A/SFB423Q.Seq.d/ 36 0.22
AFN194 (AFN194Q) /CSM/AF/AFN1-D/AFN194Q.Seq.d/ 36 0.22
AFF128 (AFF128Q) /CSM/AF/AFF1-B/AFF128Q.Seq.d/ 36 0.22
VSE812 (VSE812Q) /CSM/VS/VSE8-A/VSE812Q.Seq.d/ 34 0.85

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX251079|AX251079.1 Sequence 47 from Patent WO0168912. 36 0.14 3
BD452600|BD452600.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes. 36 0.14 3
AP001778|AP001778.2 Homo sapiens genomic DNA, chromosome 18q23 clone:RP11-735B10, WORKING DRAFT SEQUENCE, 11 unordered pieces. 38 0.19 5
CC351329|CC351329.1 OGTAB03TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0387A06, DNA sequence. 46 0.25 1
AX348898|AX348898.1 Sequence 356 from Patent WO0202807. 42 0.37 3
AX252161|AX252161.1 Sequence 422 from Patent WO0168911. 42 0.37 3
BD460625|BD460625.1 Diagnosis of Diseases Associated with Cell Cycle. 42 0.37 3
BD452547|BD452547.1 Diagnosis of Diseases Associated with Cell Cycle. 42 0.37 3
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC. 44 1.00 1
AX344574|AX344574.1 Sequence 25 from Patent WO0200932. 44 1.00 1
dna update 2005. 2.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX571864_66(BX571864|pid:none) Photorhabdus luminescens subsp. l... 33 3.9
CR931716_21(CR931716|pid:none) Streptococcus pneumoniae strain 2... 32 5.1
CP000698_2017(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 32 6.6

protein update 2009. 1. 2
PSORT

psg: 0.71 gvh: 0.51 alm: 0.24 top: 0.70 tms: 0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.32 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHK573 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHK573Z
3' end seq.
>CHK573Z.Seq
NNNNNNNNNNTTAAAAAAAAAANAAAGNATGGATGAATACACAAACGATTTTCCATGGAT
GTATATTGTNATATGTTTAACAACAATAATATCGGTGACCATATTTTACATNCTGGNTTC
ATTTTTCATAAAAAGATATAGAAATAGAAAGAATGAAGAATTGGGCCATGCATTAATAAC
CAACCCTAGTTTATACTCCTCATTATAATTCTCAACCTATAATAAAAGNA
Length of 3' end seq. 230
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -