CHK467 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHK467
Library	CH (Link to library)
Clone ID	CHK467 (Link to dictyBase)
Atlas ID	-
NBRP ID	G20516
dictyBase ID	DDB0188625
Link to Contig	Contig-U16416-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHK4-C/CHK467Q.Seq.d/
Representative seq. ID	CHK467P (Link to Original site)
Representative DNA sequence	>CHK467 (CHK467Q) /CSM/CH/CHK4-C/CHK467Q.Seq.d/ CATTTACAATTTATCAACATACAATTTTTAAATACTATTCTGCAAATTATTATAAAGTTG AGTTAATAGTTGGAGGTAAAGTTTATTTTATTCATAAATTTGGTCAATTTAGAGGTGATG ATTGTGAATTTGATGAAATTATTCCAGCTTTTTATAAGAAAGTTCAATTTTTAGATTTAT CAACACCAATTAAAGCAACAATTCAATTTTCATTTGATTTTTCATCACATCCAAAACATG CAAACATTTATTATTCCTGTATAGATGTTTGGTTATTCGACTCTGCATATTACAATTATT GCCCAACTAATAGTGGTGGTGGAAGTGGTTCATCATCAGGAGGTCAATCAAGTGGATCTT GGTCTTCAGGAGGTGGTTCATCTTCAGGAGGTCATTCAAGTGGATCCTTGGTCTTCAGGA GGTGGTTCATCTGCAGGAGGTGGTTCATCTTCAGGAAGTCATTCAAGTGGATCTTGGTCA AGTGGTGGCTCATCTTCANGAGGTCAATCAAGTGGATCTTGGTCTTCAGGAGGTGGNTCA TCTTCGGGAGGTCAATCAAGTGGATCTTGGTCTTCANGAGGTGGTTCATCTTCANGAAGT CATTCAAGTGGATCTTGGTCAAGTGGTGGCTCCATCTTCAGGAAGNCATTCAAGCTGGAT CTTGGTCCTCAGGTGGTXXXXXXXXXXAANAGNGGGGCGGCAACTGGANGCAAATAGGGG TGCTGCAACTGGAGGCAAATAAGGGGCGCTGCANCTGNAGCAAATAGNGGTGCTGCAACT GGGTGCAAAATAGTGAAANCAATGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCG CTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTG CAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTG CAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATA GTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAA ATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATG GTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTC CATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAA ATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAG CTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCT TTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATAT ANAAAATAAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	FTIYQHTIFKYYSANYYKVELIVGGKVYFIHKFGQFRGDDCEFDEIIPAFYKKVQFLDLS TPIKATIQFSFDFSSHPKHANIYYSCIDVWLFDSAYYNYCPTNSGGGSGSSSGGQSSGSW SSGGGSSSGGHSSGSLVFRRWFICRRWFIFRKSFKWILVKWWLIFXRSIKWILVFRRWXI FGRSIKWILVFXRWFIFXKSFKWILVKWWLHLQEXIQAGSWSSGG--- ---XXGGNWXQIGVLQLEANKGRCXXSKxccnwvqnsexnaavtgaangnngaaagans gaataansgaataansgaataanrgnnaaatgaangnngaaagansgaataansgaansg aataansgaaagansgaataansgaataasggngasgaanpgsivtpndqnvsplsnsda aataasttgrnprnptsraptvtptptssaeepaaggedssaiskysiqsfgifvlsmii ylvinnyslyixkik**kklk*kn
Translated Amino Acid sequence (All Frames)	Frame A: hlqfiniqflntilqiiikls*levkfilfinlvnlevmivnlmklfqlfirkfnfiy qhqlkqqfnfhlifhhiqnmqtfiipvmfgystlhitiiaqlivvvevvhhqevnqvdl glqevvhlqeviqvdpwssgggssagggsssgshssgswssggsssxgqssgswssgggs ssggqssgswssxggsssxshssgswssggsifrkxfkldlgpqv--- ---xxgaatgxkgccnwrqirgaaxxanxgaatgckivkxmpllvlqmeimalqleqi vvpqllqivvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqiv vlqllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvqlqmikmflhyrtlm lqqpqhqlqaetqeiqqvelqrshqrqplqlknqllvakiqvqspnivfnhlvslfyq* yi*fkitnilyiyxknnnnkknyknkk Frame B: iynlstynfilfckllsvnswrslfysiwsir*li*nyssflessifrfi ntnsnnsififfitsktckhllflyrclvirlcilqllpn*wwwkwfiirrsikwil vfrrwfifrrsfkwilglqevvhlqevvhlqeviqvdlgqvvahlxevnqvdlglqevxh lrevnqvdlglxevvhlxeviqvdlgqvvapssgxhsswilvlrw--- ---xxgrqlxanrgaatggkgalxlxqixvlqlgak*xqcrcnwcckwkwrcswsk* wcrncckwcrncckwcrncckrkqcrcnwcckwkwrcswskwcrncckwcckw ccncckwccswskwccncckwrcncckwwkwckwcckpwfnsnskskcfsiielc csnrsinyrqkpkksnkssnghtnanlfsrtscwwrrfkcnlqiysiiwylcfindn ifsnlkliffiyixnkiiiikkiikikk Frame C: FTIYQHTIFKYYSANYYKVELIVGGKVYFIHKFGQFRGDDCEFDEIIPAFYKKVQFLDLS TPIKATIQFSFDFSSHPKHANIYYSCIDVWLFDSAYYNYCPTNSGGGSGSSSGGQSSGSW SSGGGSSSGGHSSGSLVFRRWFICRRWFIFRKSFKWILVKWWLIFXRSIKWILVFRRWXI FGRSIKWILVFXRWFIFXKSFKWILVKWWLHLQEXIQAGSWSSGG--- ---XXGGNWXQIGVLQLEANKGRCXXSKxccnwvqnsexnaavtgaangnngaaagans gaataansgaataansgaataanrgnnaaatgaangnngaaagansgaataansgaansg aataansgaaagansgaataansgaataasggngasgaanpgsivtpndqnvsplsnsda aataasttgrnprnptsraptvtptptssaeepaaggedssaiskysiqsfgifvlsmii ylvinnyslyixkik**kklk*kn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHK467 (CHK467Q) /CSM/CH/CHK4-C/CHK467Q.Seq.d/ 2668 0.0 SHA163 (SHA163Q) /CSM/SH/SHA1-C/SHA163Q.Seq.d/ 1296 0.0 SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/ 1287 0.0 AHL869 (AHL869Q) /CSM/AH/AHL8-C/AHL869Q.Seq.d/ 1287 0.0 SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/ 1275 0.0 SHD708 (SHD708Q) /CSM/SH/SHD7-A/SHD708Q.Seq.d/ 1271 0.0 CHM242 (CHM242Q) /CSM/CH/CHM2-B/CHM242Q.Seq.d/ 1267 0.0 CHR187 (CHR187Q) /CSM/CH/CHR1-D/CHR187Q.Seq.d/ 1263 0.0 SHA778 (SHA778Q) /CSM/SH/SHA7-D/SHA778Q.Seq.d/ 1251 0.0 SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/ 1249 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BX297757\|BX297757.1 Rainbow trout multi-tissues - normalized + 1 subtraction (tcay) clone tcay0002b.d.04, 5prim end (M13R primer). 34 1e-06 5 CK783714\|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence. 30 0.006 3 BA000026\|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 32 0.008 29 AC141063\|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces. 30 0.014 3 AC068915\|AC068915.3 Homo sapiens chromosome 6 clone RP11-31K13, WORKING DRAFT SEQUENCE, 19 unordered pieces. 36 0.018 2 AL445196\|AL445196.7 Human DNA sequence from clone RP11-31K13 on chromosome 6 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, the 5' end of the VMP gene for vesicular membrane protein p24 and one CpG island. 36 0.018 2 AC010461\|AC010461.7 Homo sapiens chromosome 5 clone CTD-2275A5, complete sequence. 52 0.029 1 AC025169\|AC025169.5 Homo sapiens chromosome 5 clone CTC-352M6, complete sequence. 52 0.029 1 AC141261\|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces. 28 0.049 3 AX364510\|AX364510.1 Sequence 517 from Patent WO0208410. 32 0.093 3
dna update	2005. 2. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB... 225 3e-57 S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu... 37 1.8 U87912_1(U87912\|pid:none) Dictyostelium discoideum MAP kinase ki... 37 1.8 (Q7M3S9) RecName: Full=RING finger protein B; Short=Pro... 37 1.8 T15781(T15781)hypothetical protein C39D10.4 - Caenorhabditis ele... 36 3.0 BA000028_1909(BA000028\|pid:none) Oceanobacillus iheyensis HTE831... 36 3.9 FM992688_758(FM992688\|pid:none) Candida dubliniensis CD36 chromo... 35 5.1 CP000471_2084(CP000471\|pid:none) Magnetococcus sp. MC-1, complet... 35 8.7 (Q4P7Q1) RecName: Full=Vacuolar protein sorting-associated prote... 35 8.7 AE017244_553(AE017244\|pid:none) Mycoplasma hyopneumoniae 7448, c... 35 8.7
protein update	2009. 4. 7
PSORT	psg: 0.61 gvh: 0.23 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.07 nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for CHK467 is nuc
5' end seq. ID	CHK467F
5' end seq.	>CHK467F.Seq CATTTACAATTTATCAACATACAATTTTTAAATACTATTCTGCAAATTATTATAAAGTTG AGTTAATAGTTGGAGGTAAAGTTTATTTTATTCATAAATTTGGTCAATTTAGAGGTGATG ATTGTGAATTTGATGAAATTATTCCAGCTTTTTATAAGAAAGTTCAATTTTTAGATTTAT CAACACCAATTAAAGCAACAATTCAATTTTCATTTGATTTTTCATCACATCCAAAACATG CAAACATTTATTATTCCTGTATAGATGTTTGGTTATTCGACTCTGCATATTACAATTATT GCCCAACTAATAGTGGTGGTGGAAGTGGTTCATCATCAGGAGGTCAATCAAGTGGATCTT GGTCTTCAGGAGGTGGTTCATCTTCAGGAGGTCATTCAAGTGGATCCTTGGTCTTCAGGA GGTGGTTCATCTGCAGGAGGTGGTTCATCTTCAGGAAGTCATTCAAGTGGATCTTGGTCA AGTGGTGGCTCATCTTCANGAGGTCAATCAAGTGGATCTTGGTCTTCAGGAGGTGGNTCA TCTTCGGGAGGTCAATCAAGTGGATCTTGGTCTTCANGAGGTGGTTCATCTTCANGAAGT CATTCAAGTGGATCTTGGTCAAGTGGTGGCTCCATCTTCAGGAAGNCATTCAAGCTGGAT CTTGGTCCTCAGGTGGTNNNNNNNNNN
Length of 5' end seq.	687
3' end seq. ID	CHK467Z
3' end seq.	>CHK467Z.Seq NNNNNNNNNNAANAGNGGGGCGGCAACTGGANGCAAATAGGGGTGCTGCAACTGGAGGCA AATAAGGGGCGCTGCANCTGNAGCAAATAGNGGTGCTGCAACTGGGTGCAAAATAGTGAA ANCAATGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAAT AGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCA ACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGC GCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGT GGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACT GCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCA AACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGAT GCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCT CCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAGAT TCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGATA ATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATANAAAATAAAATAATAA TAATAAAAAAAATTATAAAAATAAAAAAAT
Length of 3' end seq.	810
Connected seq. ID	CHK467P
Connected seq.	>CHK467P.Seq CATTTACAATTTATCAACATACAATTTTTAAATACTATTCTGCAAATTATTATAAAGTTG AGTTAATAGTTGGAGGTAAAGTTTATTTTATTCATAAATTTGGTCAATTTAGAGGTGATG ATTGTGAATTTGATGAAATTATTCCAGCTTTTTATAAGAAAGTTCAATTTTTAGATTTAT CAACACCAATTAAAGCAACAATTCAATTTTCATTTGATTTTTCATCACATCCAAAACATG CAAACATTTATTATTCCTGTATAGATGTTTGGTTATTCGACTCTGCATATTACAATTATT GCCCAACTAATAGTGGTGGTGGAAGTGGTTCATCATCAGGAGGTCAATCAAGTGGATCTT GGTCTTCAGGAGGTGGTTCATCTTCAGGAGGTCATTCAAGTGGATCCTTGGTCTTCAGGA GGTGGTTCATCTGCAGGAGGTGGTTCATCTTCAGGAAGTCATTCAAGTGGATCTTGGTCA AGTGGTGGCTCATCTTCANGAGGTCAATCAAGTGGATCTTGGTCTTCAGGAGGTGGNTCA TCTTCGGGAGGTCAATCAAGTGGATCTTGGTCTTCANGAGGTGGTTCATCTTCANGAAGT CATTCAAGTGGATCTTGGTCAAGTGGTGGCTCCATCTTCAGGAAGNCATTCAAGCTGGAT CTTGGTCCTCAGGTGGT----------AANAGNGGGGCGGCAACTGGANGCAAATAGGGG TGCTGCAACTGGAGGCAAATAAGGGGCGCTGCANCTGNAGCAAATAGNGGTGCTGCAACT GGGTGCAAAATAGTGAAANCAATGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCG CTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTG CAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTG CAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATA GTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAA ATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATG GTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTC CATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAA ATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAG CTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCT TTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATAT ANAAAATAAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAAT
Length of connected seq.	1477
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas