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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK361
Library CH
(Link to library)
Clone ID CHK361
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHK361P
(Link to Original site)
Representative DNA sequence 
>CHK361 (CHK361Q) /CSM/CH/CHK3-C/CHK361Q.Seq.d/
AATATAAAAAATGAATAAGATTTTATTCATTACCATTAATTATTATTTTAATAATTTCGT
GTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGGATTCATAATGAAA
AATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGAAGAGTATTATCTG
GTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAACCAATAGAATATA
ATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTTGAATCTGAAACAG
AGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAACTTTGTGAAAGTG
ATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTATATTTTGGAGATA
TTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAACAAGTATATGAAG
GTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCAGAAAAACAAATGC
ATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATTCATGAAAAACCAG
TTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTANAAATAAAAATAATCCAGAGG
AACCAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCGTAAAXXXXXXXXXXGC
TTCTGAAGACTTGGAAGAAGAAATTGGAAAAGCTCCGGAATAAACAAAGTCAAGCATTTG
TTGANCAACATCCAAACCAACACAACAATCAAAAAACCATTCACNTGTCAAGACAATAAA
TTTACTATCAATAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
nikne*dfihyh*llf**frvvlflstekrhilnigfimknlfsnlvmilkfnmqeeyyl
vmk*v*qtl*vklltnq*niiligifiltqtqllflnlkqsfvtknssm*mdilinfvkv
iivifahgmvhllgnyileilnkiyyfvimkink*nkymkvilnki*FVVKIKFIQKNKC
MKRILNNKFFSVSKIFMKNQFMKVISNKIYYVVXIKIIQRNQVYEGDIKQDLLRRK---

---LLKTWKKKLEKLRNKQSQAFVXQHPNQHNNQKTIHXSRQ*iyyq*k
Translated Amino Acid sequence (All Frames) 
Frame A:
nikne*dfihyh*llf**frvvlflstekrhilnigfimknlfsnlvmilkfnmqeeyyl
vmk*v*qtl*vklltnq*niiligifiltqtqllflnlkqsfvtknssm*mdilinfvkv
iivifahgmvhllgnyileilnkiyyfvimkink*nkymkvilnki*FVVKIKFIQKNKC
MKRILNNKFFSVSKIFMKNQFMKVISNKIYYVVXIKIIQRNQVYEGDIKQDLLRRK---

---asedleeeigkape*tkssic*xtskptqqsknhsxvktinllsiki

Frame B:
i*kmnkilfitinyyfnnfvwcffyprrrgif*i*ds**kiyfqt***y*nstckksiiw
**nkfnkrcr*ny*qtnri*y*lgfss*prlsyff*i*nrvl*pkipvckwiy**tl*k*
*llflpmgwftc*giifwry*trsits***kstsktsi*r*y*trfnss*k*nssrktna
*rgy*ttsffpyqkys*ktsl*r*yqtrfitsxk*k*srgtkymkvilnkiyyvv---

---LLKTWKKKLEKLRNKQSQAFVXQHPNQHNNQKTIHXSRQ*iyyq*k

Frame C:
ykk*irfyslpliiiliiscgaffihgeeayfeyrihnekfifklsddikiqharrvlsg
deisltnvvgkiinkpieyninwdfhldpdsvtffesetefcnqkfqyvngyidklcesd
ncyfcpwdgslvrelyfgdikqdlllrnnenqqvkqvyegdikqdlirrknkihpekqmh
eedikqqvffriknihekpvyegdikqdllrrxnknnpeepsi*r*y*trfits*---

---f*rlgrrnwkssginkvkhllxniqtnttikkpftcqdnkftinkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK361 (CHK361Q) /CSM/CH/CHK3-C/CHK361Q.Seq.d/                       1501   0.0
CHP611 (CHP611Q) /CSM/CH/CHP6-A/CHP611Q.Seq.d/                       1241   0.0
SHK775 (SHK775Q) /CSM/SH/SHK7-D/SHK775Q.Seq.d/                       1233   0.0
SHH689 (SHH689Q) /CSM/SH/SHH6-D/SHH689Q.Seq.d/                       1233   0.0
SHG761 (SHG761Q) /CSM/SH/SHG7-C/SHG761Q.Seq.d/                       1233   0.0
SHF510 (SHF510Q) /CSM/SH/SHF5-A/SHF510Q.Seq.d/                       1233   0.0
SHE640 (SHE640Q) /CSM/SH/SHE6-B/SHE640Q.Seq.d/                       1233   0.0
SHE168 (SHE168Q) /CSM/SH/SHE1-C/SHE168Q.Seq.d/                       1233   0.0
SHD307 (SHD307Q) /CSM/SH/SHD3-A/SHD307Q.Seq.d/                       1233   0.0
SHC143 (SHC143Q) /CSM/SH/SHC1-B/SHC143Q.Seq.d/                       1233   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds.   523   0.0    11
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    40   5e-08  27
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34   7e-08  14
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   7e-08  25
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             32   7e-08  25
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence.    32   7e-08  25
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   2e-07  22
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   5e-07  21
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   5e-07  27
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   1e-06  30
dna update 2005. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...    96   2e-18
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    84   6e-15
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    80   8e-14
(Q4A5J6) RecName: Full=DNA ligase;          EC=6.5.1.2; AltName:...    42   0.024
AE016820_391(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    39   0.16
AL844506_118(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.35
AE008691_1693(AE008691|pid:none) Thermoanaerobacter tengcongensi...    37   0.79
AL844508_216(AL844508|pid:none) Plasmodium falciparum strain 3D7...    35   2.3
CP000924_671(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    35   3.0
CU442703_6(CU442703|pid:none) Mouse DNA sequence from clone CH29...    35   3.0
protein update 2009. 4. 3
PSORT 

 psg: 0.51  gvh: 0.18  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.10
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHK361 is nuc
5' end seq. ID CHK361F
5' end seq. 
>CHK361F.Seq
AATATAAAAAATGAATAAGATTTTATTCATTACCATTAATTATTATTTTAATAATTTCGT
GTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGGATTCATAATGAAA
AATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGAAGAGTATTATCTG
GTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAACCAATAGAATATA
ATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTTGAATCTGAAACAG
AGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAACTTTGTGAAAGTG
ATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTATATTTTGGAGATA
TTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAACAAGTATATGAAG
GTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCAGAAAAACAAATGC
ATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATTCATGAAAAACCAG
TTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTANAAATAAAAATAATCCAGAGG
AACCAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCGTAAANNNNNNNNNN
Length of 5' end seq. 718
3' end seq. ID CHK361Z
3' end seq. 
>CHK361Z.Seq
NNNNNNNNNNGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAAGCTCCGGAATAAACAAA
GTCAAGCATTTGTTGANCAACATCCAAACCAACACAACAATCAAAAAACCATTCACNTGT
CAAGACAATAAATTTACTATCAATAAAAATA
Length of 3' end seq. 151
Connected seq. ID CHK361P
Connected seq. 
>CHK361P.Seq
AATATAAAAAATGAATAAGATTTTATTCATTACCATTAATTATTATTTTAATAATTTCGT
GTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGGATTCATAATGAAA
AATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGAAGAGTATTATCTG
GTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAACCAATAGAATATA
ATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTTGAATCTGAAACAG
AGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAACTTTGTGAAAGTG
ATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTATATTTTGGAGATA
TTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAACAAGTATATGAAG
GTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCAGAAAAACAAATGC
ATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATTCATGAAAAACCAG
TTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTANAAATAAAAATAATCCAGAGG
AACCAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCGTAAA----------GC
TTCTGAAGACTTGGAAGAAGAAATTGGAAAAGCTCCGGAATAAACAAAGTCAAGCATTTG
TTGANCAACATCCAAACCAACACAACAATCAAAAAACCATTCACNTGTCAAGACAATAAA
TTTACTATCAATAAAAATA
Length of connected seq. 849
Full length Seq ID -
Full length Seq. -
Length of full length seq. -