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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK352
Library CH
(Link to library)
Clone ID CHK352
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16426-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHK352 (CHK352Q) /CSM/CH/CHK3-C/CHK352Q.Seq.d/
XXXXXXXXXXTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAATTCAA
GGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGATGGTACCAA
TAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACAAGTTT
AAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LVVTIVFWYFAEYKFKDISKSGIMDQYQKQQTDGTNSGDIEMKASGSSVINDSTSLN
PTVHQEFHDASHS
Translated Amino Acid sequence (All Frames) 
Frame A:
---v*lllsyfgillninsrifqrvv*winiknnklmvpivvilk*kplvvqlsmivqv*
iqlyiknsmmlliq


Frame B:
---fscyyrilvfc*i*iqgyfkewyngsiskttn*wyq*w*y*neslw*fsyq**ykfk
snctsrip*cfsf


Frame C:
---LVVTIVFWYFAEYKFKDISKSGIMDQYQKQQTDGTNSGDIEMKASGSSVINDSTSLN
PTVHQEFHDASHS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG209 (SLG209Q) /CSM/SL/SLG2-A/SLG209Q.Seq.d/                        424   e-118
SFL440 (SFL440Q) /CSM/SF/SFL4-B/SFL440Q.Seq.d/                        424   e-118
SFI453 (SFI453Q) /CSM/SF/SFI4-C/SFI453Q.Seq.d/                        424   e-118
SFC237 (SFC237Q) /CSM/SF/SFC2-B/SFC237Q.Seq.d/                        424   e-118
CHK352 (CHK352Q) /CSM/CH/CHK3-C/CHK352Q.Seq.d/                        424   e-118
CHJ512 (CHJ512Q) /CSM/CH/CHJ5-A/CHJ512Q.Seq.d/                        424   e-118
CHI833 (CHI833Q) /CSM/CH/CHI8-B/CHI833Q.Seq.d/                        424   e-118
CHF487 (CHF487Q) /CSM/CH/CHF4-D/CHF487Q.Seq.d/                        424   e-118
CHE820 (CHE820Q) /CSM/CH/CHE8-A/CHE820Q.Seq.d/                        424   e-118
CFC669 (CFC669Q) /CSM/CF/CFC6-C/CFC669Q.Seq.d/                        424   e-118
own update 2002. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   424   e-115  1
AF019983|AF019983.1 Dictyostelium discoideum R1062 gene, partial cds.   385   e-103  1
BJ595202|BJ595202.1 Physcomitrella patens subsp. patens cDNA clone:pphb47p15, 3' end, single read.    46   0.24   1
BJ597539|BJ597539.1 Physcomitrella patens subsp. patens cDNA clone:pphn20l09, 3' end, single read.    46   0.24   1
BJ610489|BJ610489.1 Physcomitrella patens subsp. patens cDNA clone:pphn12d12, 3' end, single read.    46   0.24   1
BJ604911|BJ604911.1 Physcomitrella patens subsp. patens cDNA clone:pphn32c10, 3' end, single read.    46   0.24   1
BJ598960|BJ598960.1 Physcomitrella patens subsp. patens cDNA clone:pphn25f03, 3' end, single read.    46   0.24   1
BJ165334|BJ165334.1 Physcomitrella patens subsp. patens cDNA clone:pph3o06, 3' end, single read.    46   0.24   1
BJ165291|BJ165291.1 Physcomitrella patens subsp. patens cDNA clone:pph3m06, 3' end, single read.    46   0.24   1
BJ593308|BJ593308.1 Physcomitrella patens subsp. patens cDNA clone:pphb8g10, 3' end, single read.    46   0.24   1
dna update 2005. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_57(AC116963|pid:none) Dictyostelium discoideum chromoso...   148   5e-35
AF019983_1(AF019983|pid:none) Dictyostelium discoideum R1062 gen...   136   3e-31
protein update 2009. 1. 2
PSORT 

 psg: 0.97  gvh: 0.37  alm: 0.48  top: 0.47  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for CHK352 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHK352Z
3' end seq. 
>CHK352Z.Seq
NNNNNNNNNNTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAATTCAA
GGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGATGGTACCAA
TAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACAAGTTT
AAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAA
Length of 3' end seq. 224
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -