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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK317
Library CH
(Link to library)
Clone ID CHK317
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11643-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHK317 (CHK317Q) /CSM/CH/CHK3-A/CHK317Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAAAAAAAAATTTNAAACCAAANCCAAAAAACCAAANCNAAA
AAAAAAAAAAACATATTTAATTTATTTATTTATTTATTTATTTATATATACAAATAATTT
TAAAAAAAAAAAAATCAATTCAAATTTATATTATAGTTTAATTTAATTATCACAATTATA
ATATACATATATTTTTTAATATGAGAGTTCTTTCCGTATTATTAGTTGCTCTTACAAATC
CATTCTTTGATATCAATGTCGATACTGTCTGTGAAACTAATCCATCAACAAATCTCCCAG
AAACTTCACCACCAACTGAACAACCAACTGCTCCACCAGCCACTTGTCCACCAGGTTGTA
TCCCAGCTATCCCAGTTGTTAATGTTACTGAAACTCCAGCTGCAGGTAATAGTGCTTCAA
GTATTGAAATGTCTAAATTGGTAGTTGCTATCCTTTCACTCTTCATCTTAGCTTTCTTCC
ATTAG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---kkkkknxkpxpknqxxkkkkhi*fiylfiylyiqiilkkkksiqiyiiv*FNYHNYN
IHIFFNMRVLSVLLVALTNPFFDINVDTVCETNPSTNLPETSPPTEQPTAPPATCPPGCI
PAIPVVNVTETPAAGNSASSIEMSKLVVAILSLFILAFFH*
Translated Amino Acid sequence (All Frames) 
Frame A:
---kkkkknxkpxpknqxxkkkkhi*fiylfiylyiqiilkkkksiqiyiiv*FNYHNYN
IHIFFNMRVLSVLLVALTNPFFDINVDTVCETNPSTNLPETSPPTEQPTAPPATCPPGCI
PAIPVVNVTETPAAGNSASSIEMSKLVVAILSLFILAFFH*


Frame B:
---kkkkkixnqxqktkxkkkknifnlfiylfiyiyk*f*kkknqfkfil*fnliitiii
yiyfli*effpyy*lllqihslismsilsvklihqqisqklhhqlnnqllhqplvhqvvs
qlsqllmllklqlqvivlqvlkclnw*llsfhsss*lssi


Frame C:
---kkkkkfxtkxkkpxxkkkktyliylfiylfiytnnfkkkkinsnlyysli*lsql*y
tyif*yessfriiscsyksil*yqcrycl*n*sinksprnfttn*ttncstshlstrlyp
sypsc*cy*nsscr**cfky*nv*igscypftlhlsflpl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK317 (CHK317Q) /CSM/CH/CHK3-A/CHK317Q.Seq.d/                        573   e-163
SLI372 (SLI372Q) /CSM/SL/SLI3-C/SLI372Q.Seq.d/                        513   e-145
SLF187 (SLF187Q) /CSM/SL/SLF1-D/SLF187Q.Seq.d/                        513   e-145
SLC702 (SLC702Q) /CSM/SL/SLC7-A/SLC702Q.Seq.d/                        513   e-145
CHR666 (CHR666Q) /CSM/CH/CHR6-C/CHR666Q.Seq.d/                        513   e-145
CHM336 (CHM336Q) /CSM/CH/CHM3-B/CHM336Q.Seq.d/                        513   e-145
CHD842 (CHD842Q) /CSM/CH/CHD8-B/CHD842Q.Seq.d/                        513   e-145
CHC888 (CHC888Q) /CSM/CH/CHC8-D/CHC888Q.Seq.d/                        513   e-145
CHC184 (CHC184Q) /CSM/CH/CHC1-D/CHC184Q.Seq.d/                        513   e-145
CHA414 (CHA414Q) /CSM/CH/CHA4-A/CHA414Q.Seq.d/                        513   e-145
own update 2002. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            66   2e-13  2
BV429546|BV429546.1 S237P6409FA7.T0 PortugueseWaterDog Canis familiaris STS genomic, sequence tagged site.    56   4e-13  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           62   5e-13  2
CE343538|CE343538.1 tigr-gss-dog-17000334109199 Dog Library Canis familiaris genomic, genomic survey sequence.    58   5e-13  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           62   9e-13  2
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    56   1e-12  4
AX345915|AX345915.1 Sequence 986 from Patent WO0200928.            62   1e-12  3
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    58   2e-12  5
AC127327|AC127327.4 Mus musculus chromosome 5 clone RP23-254M18, complete sequence.    64   2e-12  3
CR556714|CR556714.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    52   3e-12  7
dna update 2005. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065107_1(BC065107|pid:none) Mus musculus SLIT and NTRK-like fa...    32   9.6
(Q810B7) RecName: Full=SLIT and NTRK-like protein 5; Flags: Prec...    32   9.6
protein update 2009. 1. 2
PSORT 

 psg: 0.80  gvh: 0.65  alm: 0.23  top: 0.13  tms: 0.13  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 32.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHK317 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHK317Z
3' end seq. 
>CHK317Z.Seq
NNNNNNNNNNAAAAAAAAAAAAAAAAAATTTNAAACCAAANCCAAAAAACCAAANCNAAA
AAAAAAAAAAACATATTTAATTTATTTATTTATTTATTTATTTATATATACAAATAATTT
TAAAAAAAAAAAAATCAATTCAAATTTATATTATAGTTTAATTTAATTATCACAATTATA
ATATACATATATTTTTTAATATGAGAGTTCTTTCCGTATTATTAGTTGCTCTTACAAATC
CATTCTTTGATATCAATGTCGATACTGTCTGTGAAACTAATCCATCAACAAATCTCCCAG
AAACTTCACCACCAACTGAACAACCAACTGCTCCACCAGCCACTTGTCCACCAGGTTGTA
TCCCAGCTATCCCAGTTGTTAATGTTACTGAAACTCCAGCTGCAGGTAATAGTGCTTCAA
GTATTGAAATGTCTAAATTGGTAGTTGCTATCCTTTCACTCTTCATCTTAGCTTTCTTCC
ATTAG
Length of 3' end seq. 485
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -