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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK230
Library CH
(Link to library)
Clone ID CHK230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11241-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHK230 (CHK230Q) /CSM/CH/CHK2-B/CHK230Q.Seq.d/
XXXXXXXXXXCAACAACAACANCACCAACAACAACACCAACAACAACAACATCACCAACA
ACAGCAACAATACCNGCAGTATCGACATCAACAATAAAAACAAGTAGTCCAGACAGAACA
ACACCACTTACATCATCACCACCATTAGCATCAACNAAATCAACAGATGAACTAATGAAA
AAATTGGACCAATTTACACAAGAAACAACACCATCAATAAGAATAGCAACAACAACAACA
CCAACAACAATAACAACACCAACAACAACAGCGACAACCACAACAATAACAACAGACAAA
ACAACACCAGTTACATCATCACCACCAACAGCATCTAACATATCAAGTGAAGATTTAATG
AAAAAGTTGGACCA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---TTTXPTTTPTTTTSPTTATIPAVSTSTIKTSSPDRTTPLTSSPPLASTKSTDELMKK
LDQFTQETTPSIRIATTTTPTTITTPTTTATTTTITTDKTTPVTSSPPTASNISSEDLMK
KLD
Translated Amino Acid sequence (All Frames) 
Frame A:
---nnnxtnnntnnnnitnnsnntxsidinnknk*srqnnttyiittisinxinr*tnek
igpiytrnntinknsnnnntnnnnntnnnsdnhnnnnrqnntsyiittnsi*hik*rfne
kvgp


Frame B:
---TTTXPTTTPTTTTSPTTATIPAVSTSTIKTSSPDRTTPLTSSPPLASTKSTDELMKK
LDQFTQETTPSIRIATTTTPTTITTPTTTATTTTITTDKTTPVTSSPPTASNISSEDLMK
KLD


Frame C:
---qqxhqqqhqqqqhhqqqqqyxqyrhqq*kqvvqteqhhlhhhhh*hqxnqqmn**kn
wtnlhkkqhhq*e*qqqqhqqq*qhqqqqrqpqq*qqtkqhqlhhhhqqhltyqvki**k
swt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE433 (VHE433Q) /CSM/VH/VHE4-B/VHE433Q.Seq.d/                        234   8e-61
SHB194 (SHB194Q) /CSM/SH/SHB1-D/SHB194Q.Seq.d/                        234   8e-61
CHK709 (CHK709Q) /CSM/CH/CHK7-A/CHK709Q.Seq.d/                        234   8e-61
CHK230 (CHK230Q) /CSM/CH/CHK2-B/CHK230Q.Seq.d/                        234   8e-61
AHN116 (AHN116Q) /CSM/AH/AHN1-A/AHN116Q.Seq.d/                        234   8e-61
AHJ420 (AHJ420Q) /CSM/AH/AHJ4-A/AHJ420Q.Seq.d/                        234   8e-61
AHC605 (AHC605Q) /CSM/AH/AHC6-A/AHC605Q.Seq.d/                        234   8e-61
AHA705 (AHA705Q) /CSM/AH/AHA7-A/AHA705Q.Seq.d/                        234   8e-61
AHA575 (AHA575Q) /CSM/AH/AHA5-D/AHA575Q.Seq.d/                        234   8e-61
AHL755 (AHL755Q) /CSM/AH/AHL7-C/AHL755Q.Seq.d/                        228   5e-59
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG979931|BG979931.1 PM2-CN0099-170101-008-f12 CN0099 Homo sapiens cDNA, mRNA sequence.    38   0.005  2
AJ496547|AJ496547.1 Takifugu rubripes slc11 alpha gene for solute carrier family 11  protein, exons 1-15.    38   0.070  2
BZ146179|BZ146179.1 CH230-368C16.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-368C16, DNA sequence.    40   0.14   2
AC146061|AC146061.1 Pan troglodytes chromosome UNK clone RP43-15L14, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    36   0.23   2
AC146026|AC146026.2 Pan troglodytes BAC clone RP43-120F17 from 7, complete sequence.    36   0.23   2
AC084148|AC084148.3 Homo sapiens chromosome 7 clone RP11-125N18, WORKING DRAFT SEQUENCE, 18 unordered pieces.    36   0.23   2
AC003093|AC003093.1 Human BAC clone CTA-385F2 from 7p15, complete sequence.    36   0.24   2
CQ750673|CQ750673.1 Sequence 36607 from Patent WO02068579.         46   0.42   1
AP003123|AP003123.2 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1.    46   0.42   1
AC109322|AC109322.16 Homo sapiens chromosome 8, clone CTD-3065J16, complete sequence.    46   0.42   1
dna update 2005. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ622826_1(AJ622826|pid:none) Emericella nidulans kipA gene for ...    32   6.6
protein update 2009. 1. 2
PSORT 

 psg: 0.88  gvh: 0.49  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHK230 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHK230Z
3' end seq. 
>CHK230Z.Seq
NNNNNNNNNNCAACAACAACANCACCAACAACAACACCAACAACAACAACATCACCAACA
ACAGCAACAATACCNGCAGTATCGACATCAACAATAAAAACAAGTAGTCCAGACAGAACA
ACACCACTTACATCATCACCACCATTAGCATCAACNAAATCAACAGATGAACTAATGAAA
AAATTGGACCAATTTACACAAGAAACAACACCATCAATAAGAATAGCAACAACAACAACA
CCAACAACAATAACAACACCAACAACAACAGCGACAACCACAACAATAACAACAGACAAA
ACAACACCAGTTACATCATCACCACCAACAGCATCTAACATATCAAGTGAAGATTTAATG
AAAAAGTTGGACCA
Length of 3' end seq. 374
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -