AFG418
Library AF
(Link to library)
Clone ID AFG418
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16341-1
Original site URL
Representative seq. ID AFG418F
(Link to Original site)
Representative DNA sequence
>AFG418 (AFG418Q) /CSM/AF/AFG4-A/AFG418Q.Seq.d/
ATTCATTAAAATTATTTGTTATTTATTTATTTTCTAAAATAATTAAAAATATATCATAAT
TTTATTACTTAATCTATATATAAAATTCAATTTAAAAAAAATTATTTTAAAXXXXXXXXX
X
sequence update 2001. 6. 2
Translated Amino Acid sequence
fikiicylfif*nn*KYIIILLLNLYIKFNLKKIIL---


Translated Amino Acid sequence (All Frames)
Frame A:
ih*nyllfiyflk*lkiyhnfit*siykiqfkknyf---


Frame B:
fikiicylfif*nn*KYIIILLLNLYIKFNLKKIIL---


Frame C:
slklfviylfskiiknis*fyyliyi*nsi*kklf*---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 121
length of database: 80,480,566
effective HSP length: 17
effective length of query: 104
effective length of database: 78,821,179
effective search space: 8197402616
effective search space used: 8197402616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 3
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 33817648
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 121
length of database: V,977,520,219
effective HSP length: 21
effective length of query: 100
effective length of database: V,267,349,611
effective search space: 3826734961100
effective search space used: 3826734961100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 5. 9
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 83,758,733
protein update 2009. 4.20
PSORT

psg: 0.92 gvh: 0.30 alm: 0.38 top: 0.60 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: vacuolar

>> prediction for AFG418 is cyt

5' end seq. ID AFG418F
5' end seq.
>AFG418F.Seq
ATTCATTAAAATTATTTGTTATTTATTTATTTTCTAAAATAATTAAAAATATATCATAAT
TTTATTACTTAATCTATATATAAAATTCAATTTAAAAAAAATTATTTTAAA---------
-
Length of 5' end seq. 111
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -