CHK148
Library CH
(Link to library)
Clone ID CHK148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10902-1
Original site URL
Representative seq. ID CHK148P
(Link to Original site)
Representative DNA sequence
>CHK148 (CHK148Q) /CSM/CH/CHK1-B/CHK148Q.Seq.d/
TTTTAAGTCCCAGATAACTGGTTAACAGAAGAAACAATATCAAATGCCTTGAAAGGAGAG
AATTTAAATCCTCGAGTAATAAATACTCAAGATATTGCAAATATAATATTATATTTCTCA
AAAATGCCAGAATATCTAGATAACTGCCAAGTATTGATTTTCAATGATAAAACAAGGGGT
TTTGTTAATATTGAAAACAAAATAATAAACCAACTATATAACCAAACTCATTTTGAAATG
ACTCAAGATGTTTTAAATTTAAAATTCATTGACAGTGAACTTACCAATATTATCAAAATG
TGTAAAAATCCTCTCATTTTGAATTCACTTAAAACGATTAACATCTTTGATTTCAACTAT
GTTGATTTTTATTTCCACTATCTCTTACCAAATTTCAATATATTATCAGCTGAAAAAAAT
ATCTCATTTTTAAACAAATTATTGGAATACTTTACATTTGAAAAGAACTATGATTTTAAA
TCAATAGACCATCTTCTAATATCTAAAGATAGAATAAAAATACTAAAAGGTTCAAAAGTT
TTTCCTTTTGTTAAAAATGGTATTCAAGAGTTTACTTTAATTTCAAAATTATTCAATCCA
ACATTTAAACAACATGATTTCATATTAXXXXXXXXXXAAAAAGGTATTTCTAAAAGTGAA
GCATTCAATTACCTATTTAATTCCACTGGTTTGAATGTAAACTCTTCAATTGTATCAAAT
CTAGAAAGAGAGTTTGTAAATGATGAACCAATTGTCGATCCAGTTGATAATTTCTTGGCT
CAAACTAATCAAAATGTGGTTGTTAATTCTATTGATGACAACCATACAACTTTAATCCAA
AAAATTCATTGTAGACACTACAACACCATTGCACTAAGAAATCGTGAAGCTGCTGAAACT
TTATTCTACAATCAATCATTAATTAGACAATCAATTTACTTTTACTATGTTTCAACAGAT
ATGCTACTAAGAAGTCTTTTGGTTTTTTATTTTGATAATAATATTCCAGATTCTCTTTCA
ATTACTCGTATGAGAGATGTATTATCCAGAAAATCAACTACAACCATACCACACATTCCA
GATCGTTTCAATGATTTCAAAGAAGCCCACTTAAAAACAACAAACATCAATAGTAATGAT
CTAATTGAATTTCGTTCAATTACTTCTCAACTATTAAACATTTCTAATCAAATGANAATT
AATAGAAAATAAATAAANATATATAACTTTCTTTACGCAACCAAA
sequence update 2002.10.25
Translated Amino Acid sequence
f*VPDNWLTEETISNALKGENLNPRVINTQDIANIILYFSKMPEYLDNCQVLIFNDKTRG
FVNIENKIINQLYNQTHFEMTQDVLNLKFIDSELTNIIKMCKNPLILNSLKTINIFDFNY
VDFYFHYLLPNFNILSAEKNISFLNKLLEYFTFEKNYDFKSIDHLLISKDRIKILKGSKV
FPFVKNGIQEFTLISKLFNPTFKQHDFIL---

---KGISKSEAFNYLFNSTGLNVNSSIVSNLEREFVNDEPIVDPVDNFLAQTNQNVVVNS
IDDNHTTLIQKIHCRHYNTIALRNREAAETLFYNQSLIRQSIYFYYVSTDMLLRSLLVFY
FDNNIPDSLSITRMRDVLSRKSTTTIPHIPDRFNDFKEAHLKTTNINSNDLIEFRSITSQ
LLNISNQMXINRK*ixiynflyatk


Translated Amino Acid sequence (All Frames)
Frame A:
f*VPDNWLTEETISNALKGENLNPRVINTQDIANIILYFSKMPEYLDNCQVLIFNDKTRG
FVNIENKIINQLYNQTHFEMTQDVLNLKFIDSELTNIIKMCKNPLILNSLKTINIFDFNY
VDFYFHYLLPNFNILSAEKNISFLNKLLEYFTFEKNYDFKSIDHLLISKDRIKILKGSKV
FPFVKNGIQEFTLISKLFNPTFKQHDFIL---

---kkvflkvkhsityliplv*m*tlqlyqi*kesl*mmnqlsiqliiswlklikmwlli
llmttiql*skkfivdtttplh*eivkllklystinh*ldnqftftmfqqicy*evfwff
iliiifqilfqllv*emyypenqlqpyhtfqivsmiskkpt*kqqtsivmi*lnfvqlll
ny*tflik*xlienk*xyitfftqp

Frame B:
fksqitg*qkkqyqmp*keri*ile**ilkilqi*yyisqkcqni*itaky*fsmikqgv
llilktk**tnyitklilk*lkmf*i*nsltvnlpilskcvkilsf*ihlkrltslistm
lifistisyqisiyyqlkkishf*tnywntlhlkrtmilnq*tif*ylkie*ky*kvqkf
flllkmvfksll*fqnysiqhlnnmisy---

---kryf*k*siqlpi*fhwfecklfnciksrkrvck**tncrss**flgsn*skcgc*f
y**qpynfnpknsl*tlqhhctkks*sc*nfilqsiin*tinllllcfnryatkksfgfl
f***ysrfsfnysyerciiqkinynhtthsrsfq*fqrsplknnkhq***sn*isfnyfs
tikhf*snxn**kinkxi*lslrnq

Frame C:
lspr*lvnrrnnikclerrefksssnkysryckyniiflknarisr*lpsidfq**nkgf
c*y*kqnnkpti*pnsf*ndsrcfkfkih*q*tyqyyqnv*ksshfeft*nd*hl*fqlc
*flfplsltkfqyiis*kkylifkqiigilyi*kel*f*inrpssni*r*nkntkrfksf
sfc*kwysrvyfnfkiiqsni*tt*fhi---

---KGISKSEAFNYLFNSTGLNVNSSIVSNLEREFVNDEPIVDPVDNFLAQTNQNVVVNS
IDDNHTTLIQKIHCRHYNTIALRNREAAETLFYNQSLIRQSIYFYYVSTDMLLRSLLVFY
FDNNIPDSLSITRMRDVLSRKSTTTIPHIPDRFNDFKEAHLKTTNINSNDLIEFRSITSQ
LLNISNQMXINRK*ixiynflyatk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHK148 (CHK148Q) /CSM/CH/CHK1-B/CHK148Q.Seq.d/ 2355 0.0
AHB718 (AHB718Q) /CSM/AH/AHB7-A/AHB718Q.Seq.d/ 1162 0.0
AHC190 (AHC190Q) /CSM/AH/AHC1-D/AHC190Q.Seq.d/ 1154 0.0
AHM639 (AHM639Q) /CSM/AH/AHM6-B/AHM639Q.Seq.d/ 1152 0.0
AHB627 (AHB627Q) /CSM/AH/AHB6-B/AHB627Q.Seq.d/ 1150 0.0
AHQ479 (AHQ479Q) /CSM/AH/AHQ4-D/AHQ479Q.Seq.d/ 1144 0.0
AHN449 (AHN449Q) /CSM/AH/AHN4-C/AHN449Q.Seq.d/ 1144 0.0
AHL236 (AHL236Q) /CSM/AH/AHL2-B/AHL236Q.Seq.d/ 1144 0.0
AHQ589 (AHQ589Q) /CSM/AH/AHQ5-D/AHQ589Q.Seq.d/ 1136 0.0
AHR157 (AHR157Q) /CSM/AH/AHR1-C/AHR157Q.Seq.d/ 1130 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CP000013|CP000013.1 Borrelia garinii PBi, complete genome. 36 3e-10 33
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 2e-09 32
AX344550|AX344550.1 Sequence 1 from Patent WO0200932. 36 2e-09 19
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5. 38 3e-09 20
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 36 6e-09 20
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 38 2e-08 27
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 36 2e-08 19
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 34 2e-08 22
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 40 3e-08 10
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 34 7e-08 30
dna update 2005. 1.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017308_486(AE017308|pid:none) Mycoplasma mobile 163K complete ... 50 2e-04
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 48 8e-04
AF063866_35(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 45 0.004
CP000361_1121(CP000361|pid:none) Arcobacter butzleri RM4018, com... 45 0.004
AL844509_259(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.007
CR382126_560(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 45 0.007
AE014188_288(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.009
AF267203_2(AF267203|pid:none) Candidatus Carsonella ruddii natur... 44 0.015
CP001184_508(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 41 0.096
AE015450_253(AE015450|pid:none) Mycoplasma gallisepticum strain ... 40 0.13
protein update 2009. 4. 3
PSORT

psg: 0.75 gvh: 0.41 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHK148 is cyt

5' end seq. ID CHK148F
5' end seq.
>CHK148F.Seq
TTTTAAGTCCCAGATAACTGGTTAACAGAAGAAACAATATCAAATGCCTTGAAAGGAGAG
AATTTAAATCCTCGAGTAATAAATACTCAAGATATTGCAAATATAATATTATATTTCTCA
AAAATGCCAGAATATCTAGATAACTGCCAAGTATTGATTTTCAATGATAAAACAAGGGGT
TTTGTTAATATTGAAAACAAAATAATAAACCAACTATATAACCAAACTCATTTTGAAATG
ACTCAAGATGTTTTAAATTTAAAATTCATTGACAGTGAACTTACCAATATTATCAAAATG
TGTAAAAATCCTCTCATTTTGAATTCACTTAAAACGATTAACATCTTTGATTTCAACTAT
GTTGATTTTTATTTCCACTATCTCTTACCAAATTTCAATATATTATCAGCTGAAAAAAAT
ATCTCATTTTTAAACAAATTATTGGAATACTTTACATTTGAAAAGAACTATGATTTTAAA
TCAATAGACCATCTTCTAATATCTAAAGATAGAATAAAAATACTAAAAGGTTCAAAAGTT
TTTCCTTTTGTTAAAAATGGTATTCAAGAGTTTACTTTAATTTCAAAATTATTCAATCCA
ACATTTAAACAACATGATTTCATATTANNNNNNNNNN
Length of 5' end seq. 637
3' end seq. ID CHK148Z
3' end seq.
>CHK148Z.Seq
NNNNNNNNNNAAAAAGGTATTTCTAAAAGTGAAGCATTCAATTACCTATTTAATTCCACT
GGTTTGAATGTAAACTCTTCAATTGTATCAAATCTAGAAAGAGAGTTTGTAAATGATGAA
CCAATTGTCGATCCAGTTGATAATTTCTTGGCTCAAACTAATCAAAATGTGGTTGTTAAT
TCTATTGATGACAACCATACAACTTTAATCCAAAAAATTCATTGTAGACACTACAACACC
ATTGCACTAAGAAATCGTGAAGCTGCTGAAACTTTATTCTACAATCAATCATTAATTAGA
CAATCAATTTACTTTTACTATGTTTCAACAGATATGCTACTAAGAAGTCTTTTGGTTTTT
TATTTTGATAATAATATTCCAGATTCTCTTTCAATTACTCGTATGAGAGATGTATTATCC
AGAAAATCAACTACAACCATACCACACATTCCAGATCGTTTCAATGATTTCAAAGAAGCC
CACTTAAAAACAACAAACATCAATAGTAATGATCTAATTGAATTTCGTTCAATTACTTCT
CAACTATTAAACATTTCTAATCAAATGANAATTAATAGAAAATAAATAAANATATATAAC
TTTCTTTACGCAACCAAA
Length of 3' end seq. 618
Connected seq. ID CHK148P
Connected seq.
>CHK148P.Seq
TTTTAAGTCCCAGATAACTGGTTAACAGAAGAAACAATATCAAATGCCTTGAAAGGAGAG
AATTTAAATCCTCGAGTAATAAATACTCAAGATATTGCAAATATAATATTATATTTCTCA
AAAATGCCAGAATATCTAGATAACTGCCAAGTATTGATTTTCAATGATAAAACAAGGGGT
TTTGTTAATATTGAAAACAAAATAATAAACCAACTATATAACCAAACTCATTTTGAAATG
ACTCAAGATGTTTTAAATTTAAAATTCATTGACAGTGAACTTACCAATATTATCAAAATG
TGTAAAAATCCTCTCATTTTGAATTCACTTAAAACGATTAACATCTTTGATTTCAACTAT
GTTGATTTTTATTTCCACTATCTCTTACCAAATTTCAATATATTATCAGCTGAAAAAAAT
ATCTCATTTTTAAACAAATTATTGGAATACTTTACATTTGAAAAGAACTATGATTTTAAA
TCAATAGACCATCTTCTAATATCTAAAGATAGAATAAAAATACTAAAAGGTTCAAAAGTT
TTTCCTTTTGTTAAAAATGGTATTCAAGAGTTTACTTTAATTTCAAAATTATTCAATCCA
ACATTTAAACAACATGATTTCATATTA----------AAAAAGGTATTTCTAAAAGTGAA
GCATTCAATTACCTATTTAATTCCACTGGTTTGAATGTAAACTCTTCAATTGTATCAAAT
CTAGAAAGAGAGTTTGTAAATGATGAACCAATTGTCGATCCAGTTGATAATTTCTTGGCT
CAAACTAATCAAAATGTGGTTGTTAATTCTATTGATGACAACCATACAACTTTAATCCAA
AAAATTCATTGTAGACACTACAACACCATTGCACTAAGAAATCGTGAAGCTGCTGAAACT
TTATTCTACAATCAATCATTAATTAGACAATCAATTTACTTTTACTATGTTTCAACAGAT
ATGCTACTAAGAAGTCTTTTGGTTTTTTATTTTGATAATAATATTCCAGATTCTCTTTCA
ATTACTCGTATGAGAGATGTATTATCCAGAAAATCAACTACAACCATACCACACATTCCA
GATCGTTTCAATGATTTCAAAGAAGCCCACTTAAAAACAACAAACATCAATAGTAATGAT
CTAATTGAATTTCGTTCAATTACTTCTCAACTATTAAACATTTCTAATCAAATGANAATT
AATAGAAAATAAATAAANATATATAACTTTCTTTACGCAACCAAA
Length of connected seq. 1235
Full length Seq ID -
Full length Seq. -
Length of full length seq. -