CHJ882
Library CH
(Link to library)
Clone ID CHJ882
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15559-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHJ882 (CHJ882Q) /CSM/CH/CHJ8-D/CHJ882Q.Seq.d/
XXXXXXXXXXAGTCAGAACAACATTTCCACAATGGCTTCCCAGTTATTGAACGTCCAAGA
CCACTCGATCCAAATAGGAAGGATGCTTATGGCAATTTAGAATACTATGAAGATGAAACC
ACCTATAGTGGTTTAATATTACGTAATCAATTGATTTGTTTACTCTATTATAGAATCTTT
TGTCATGAACAACCATTACCTCAAAATCCACGTTTACTTGGAGGCAATTCAAATAGACGT
TACAATCAACGTCGTTTTGGTCGTCCAACCGAATATGGCTACGCTCCTGCTGATCCAAGA
ATGACCTATGAACTAATGACTCAATCATTGGCAAGACATTTCCCACCAATCGATAAAATG
AACCTTAAAAAAGAAGAGATCGAAACAATGTATATCGATCTTAGACCCTATATGAATCTA
AGTACAATCGTTGCAAATGAAACTTATTCCTACTCGGAATC
sequence update 2002. 9.10
Translated Amino Acid sequence
---SEQHFHNGFPVIERPRPLDPNRKDAYGNLEYYEDETTYSGLILRNQLICLLYYRIFC
HEQPLPQNPRLLGGNSNRRYNQRRFGRPTEYGYAPADPRMTYELMTQSLARHFPPIDKMN
LKKEEIETMYIDLRPYMNLSTIVANETYSYSE


Translated Amino Acid sequence (All Frames)
Frame A:
---vrttfpqwlpsy*tskttrsk*egclwqfril*r*nhl*wfnit*sidlftll*nll
s*ttitskstftwrqfk*tlqstsfwssnriwlrsc*skndl*tndsiigktfptnr*ne
p*krrdrnnvyrs*tlyeskynrck*nlfllgi


Frame B:
---SEQHFHNGFPVIERPRPLDPNRKDAYGNLEYYEDETTYSGLILRNQLICLLYYRIFC
HEQPLPQNPRLLGGNSNRRYNQRRFGRPTEYGYAPADPRMTYELMTQSLARHFPPIDKMN
LKKEEIETMYIDLRPYMNLSTIVANETYSYSE


Frame C:
---qnnistmasqllnvqdhsiqigrmlmai*ntmkmkppivv*yyvin*fvysiiesfv
mnnhylkihvyleaiqidvtinvvlvvqpnmatllliqe*pmn**lnhwqdishqsik*t
lkkkrskqcisildpi*i*vqslqmkliptrn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHJ882 (CHJ882Q) /CSM/CH/CHJ8-D/CHJ882Q.Seq.d/ 894 0.0
AHM582 (AHM582Q) /CSM/AH/AHM5-D/AHM582Q.Seq.d/ 892 0.0
CHQ556 (CHQ556Q) /CSM/CH/CHQ5-C/CHQ556Q.Seq.d/ 890 0.0
AHP611 (AHP611Q) /CSM/AH/AHP6-A/AHP611Q.Seq.d/ 890 0.0
AHC630 (AHC630Q) /CSM/AH/AHC6-B/AHC630Q.Seq.d/ 890 0.0
AFD147 (AFD147Q) /CSM/AF/AFD1-B/AFD147Q.Seq.d/ 882 0.0
SLH751 (SLH751Q) /CSM/SL/SLH7-C/SLH751Q.Seq.d/ 874 0.0
SLH842 (SLH842Q) /CSM/SL/SLH8-B/SLH842Q.Seq.d/ 870 0.0
AHF472 (AHF472Q) /CSM/AH/AHF4-C/AHF472Q.Seq.d/ 842 0.0
CHK193 (CHK193Q) /CSM/CH/CHK1-D/CHK193Q.Seq.d/ 829 0.0

own update 2002. 9.30
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF414428|AF414428.1 Dictyostelium discoideum chloride channel protein ClcA (clcA) mRNA, complete cds. 890 0.0 1
AF303582|AF303582.2 Trypanosoma brucei RNA polymerase (MTRNAP) gene, complete cds, nuclear gene for mitochondrial product. 48 0.13 1
AQ652908|AQ652908.1 Sheared DNA-9P11.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-9P11, genomic survey sequence. 48 0.13 1
AQ947022|AQ947022.1 Sheared DNA-45H14.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-45H14, genomic survey sequence. 48 0.13 1
CR352259|CR352259.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 2.1 1
AC104961|AC104961.7 Homo sapiens chromosome 18, clone RP11-958F21, complete sequence. 34 2.4 7
U97550|U97550.2 Caenorhabditis elegans cosmid T20F7, complete sequence. 36 2.9 4
AP001190|AP001190.3 Homo sapiens genomic DNA, chromosome 18q11.2 clone:RP11-689D23, WORKING DRAFT SEQUENCE, 9 unordered pieces. 34 4.1 7
AP007902|AP007902.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT43M09, TM1213. 38 4.7 5
AC096531|AC096531.2 Homo sapiens chromosome 1 clone RP11-472F19, complete sequence. 36 6.2 6
dna update 2005. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54AX6) RecName: Full=Chloride channel protein A; &AF414428_1(... 317 1e-85
T01843(T01843)chloride channel protein homolog F9D12.10 - Arabid... 47 2e-04
Z71450_1(Z71450|pid:none) A.thaliana mRNA for CLC-d chloride cha... 47 2e-04
AC123974_4(AC123974|pid:none) Oryza sativa chromosome 3 BAC OSJN... 43 0.003
AK056551_1(AK056551|pid:none) Homo sapiens cDNA FLJ31989 fis, cl... 41 0.014
BC091969_1(BC091969|pid:none) Danio rerio chloride channel 7, mR... 39 0.041
AK292136_1(AK292136|pid:none) Homo sapiens cDNA FLJ78478 complet... 39 0.054
BC006158_1(BC006158|pid:none) Homo sapiens chloride channel 7, m... 39 0.054
AE006467_8(AE006467|pid:none) Homo sapiens 16p13.3 sequence sect... 39 0.054
BC004946_1(BC004946|pid:none) Homo sapiens, clone IMAGE:3615790,... 39 0.054
protein update 2009. 5.19
PSORT

psg: 0.75 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHJ882 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHJ882Z
3' end seq.
>CHJ882Z.Seq
NNNNNNNNNNAGTCAGAACAACATTTCCACAATGGCTTCCCAGTTATTGAACGTCCAAGA
CCACTCGATCCAAATAGGAAGGATGCTTATGGCAATTTAGAATACTATGAAGATGAAACC
ACCTATAGTGGTTTAATATTACGTAATCAATTGATTTGTTTACTCTATTATAGAATCTTT
TGTCATGAACAACCATTACCTCAAAATCCACGTTTACTTGGAGGCAATTCAAATAGACGT
TACAATCAACGTCGTTTTGGTCGTCCAACCGAATATGGCTACGCTCCTGCTGATCCAAGA
ATGACCTATGAACTAATGACTCAATCATTGGCAAGACATTTCCCACCAATCGATAAAATG
AACCTTAAAAAAGAAGAGATCGAAACAATGTATATCGATCTTAGACCCTATATGAATCTA
AGTACAATCGTTGCAAATGAAACTTATTCCTACTCGGAATC
Length of 3' end seq. 461
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -