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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ858
Library CH
(Link to library)
Clone ID CHJ858
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHJ858P
(Link to Original site)
Representative DNA sequence 
>CHJ858 (CHJ858Q) /CSM/CH/CHJ8-C/CHJ858Q.Seq.d/
CATAAAAATGTATAGTAAAAAATATACATCCTTTGTAATAGTATTGATTTTATCATGTAT
CATTTCAACATGTACATCTAATCAAATTTCTGAAGATGTGGGTAAAGCAATTAATCAAAA
ATTAAATGAAAATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAA
TCAAGTTATTGAAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAA
ACATGATTCATTAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCA
AAGTTATTTACCAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGG
CCAAAATAATAATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACA
ATTCCAAAGTATAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACCTGGTG
GTACTGGTGATAGTGATTCAAAGACCGCCAATGAGGCAATTATCTTTTCATCAAAGGTAT
CAACTACTGACCGTCAAGAAAGTATCATTGGTCAAGTTGCTATAACTGCTAAAGATTCTT
TGGGTGCAXXXXXXXXXXTGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGT
TGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATT
AGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACT
TAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGT
TGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACA
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATCAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
*kcivknihpl**y*fyhvsfqhvhlikflkmwvkqlikn*mkilkklkm*lynlrmlqi
kllkn*klnikdkny*vk*nmih*etlqqitfgdylikfkviyqkttikfqklkkhfqva
kiiisvavlviqlvlvlphnskv*MVYPELHNLVVVQPGGTGDSDSKTANEAIIFSSKVS
TTDRQESIIGQVAITAKDSLGA---

---GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNEN
ENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLE
LDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLSEQ
EQNQK*fnhsfflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
hknv**kiyilcnsidfimyhfnmyi*snf*rcg*sn*skik*ky*ks*rcscti*ecck
ssy*riks*tsktriir*skt*fikrlcnklhlgit**nsklftkrqq*sfks*rsifkw
pk**yr*qyw*fnwc*yfptipkykwfirsfti*w*fnlvvlviviqrppmrqlsfhqry
qlltvkkvslvkll*llkilwv---

---w*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e
*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*
igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirt
rtkskii*sfflfkk

Frame B:
ikmyskkytsfvivlilsciistctsnqisedvgkainqklneniekvedvvvqfenvan
qvieelkvehqrqellgevkhdslrdsatnyiwglldkiqsylpkdnnkvskveeafssg
qnnnigssigdstgastspqfqsinglsgasqssgsstwwyw***fkdrq*gnylfikgi
ny*psrkyhwsscync*rffgc---

---GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNEN
ENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLE
LDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLSEQ
EQNQK*fnhsfflkn

Frame C:
*kcivknihpl**y*fyhvsfqhvhlikflkmwvkqlikn*mkilkklkm*lynlrmlqi
kllkn*klnikdkny*vk*nmih*etlqqitfgdylikfkviyqkttikfqklkkhfqva
kiiisvavlviqlvlvlphnskv*MVYPELHNLVVVQPGGTGDSDSKTANEAIIFSSKVS
TTDRQESIIGQVAITAKDSLGA---

---vkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrm
kinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnln
wmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinnyqnk
nkiknnliilsf*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ858 (CHJ858Q) /CSM/CH/CHJ8-C/CHJ858Q.Seq.d/                       1518   0.0
SHA112 (SHA112Q) /CSM/SH/SHA1-A/SHA112Q.Seq.d/                       1193   0.0
CHO150 (CHO150Q) /CSM/CH/CHO1-C/CHO150Q.Seq.d/                       1193   0.0
CHM636 (CHM636Q) /CSM/CH/CHM6-B/CHM636Q.Seq.d/                       1193   0.0
SHA262 (SHA262Q) /CSM/SH/SHA2-C/SHA262Q.Seq.d/                       1185   0.0
CHS365 (CHS365Q) /CSM/CH/CHS3-C/CHS365Q.Seq.d/                       1178   0.0
AHO121 (AHO121Q) /CSM/AH/AHO1-A/AHO121Q.Seq.d/                       1178   0.0
AHJ457 (AHJ457Q) /CSM/AH/AHJ4-C/AHJ457Q.Seq.d/                       1178   0.0
AHI743 (AHI743Q) /CSM/AH/AHI7-B/AHI743Q.Seq.d/                       1178   0.0
AHG624 (AHG624Q) /CSM/AH/AHG6-A/AHG624Q.Seq.d/                       1178   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   795   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   9e-34  18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-13  26
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    40   5e-12  32
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   2e-11  33
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-10  26
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        36   4e-10  29
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-08  27
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   7e-08  26
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   7e-08  21
dna update 2005. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   246   2e-82
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    42   0.031
AE016830_1944(AE016830|pid:none) Enterococcus faecalis V583, com...    40   0.12
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           40   0.12
CP001287_2821(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    40   0.15
CU207366_1064(CU207366|pid:none) Gramella forsetii KT0803 comple...    39   0.35
AM260479_1771(AM260479|pid:none) Ralstonia eutropha H16 chromoso...    39   0.45
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    37   1.0
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    37   1.3
AP008230_2655(AP008230|pid:none) Desulfitobacterium hafniense Y5...    37   1.3
protein update 2009. 4. 3
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHJ858 is nuc
5' end seq. ID CHJ858F
5' end seq. 
>CHJ858F.Seq
CATAAAAATGTATAGTAAAAAATATACATCCTTTGTAATAGTATTGATTTTATCATGTAT
CATTTCAACATGTACATCTAATCAAATTTCTGAAGATGTGGGTAAAGCAATTAATCAAAA
ATTAAATGAAAATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAA
TCAAGTTATTGAAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAA
ACATGATTCATTAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCA
AAGTTATTTACCAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGG
CCAAAATAATAATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACA
ATTCCAAAGTATAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACCTGGTG
GTACTGGTGATAGTGATTCAAAGACCGCCAATGAGGCAATTATCTTTTCATCAAAGGTAT
CAACTACTGACCGTCAAGAAAGTATCATTGGTCAAGTTGCTATAACTGCTAAAGATTCTT
TGGGTGCANNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID CHJ858Z
3' end seq. 
>CHJ858Z.Seq
NNNNNNNNNNTGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGA
ATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAAC
AAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC
AAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTG
AATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTC
AAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAAC
AACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATCAGAAC
AAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
Length of 3' end seq. 588
Connected seq. ID CHJ858P
Connected seq. 
>CHJ858P.Seq
CATAAAAATGTATAGTAAAAAATATACATCCTTTGTAATAGTATTGATTTTATCATGTAT
CATTTCAACATGTACATCTAATCAAATTTCTGAAGATGTGGGTAAAGCAATTAATCAAAA
ATTAAATGAAAATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAA
TCAAGTTATTGAAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAA
ACATGATTCATTAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCA
AAGTTATTTACCAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGG
CCAAAATAATAATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACA
ATTCCAAAGTATAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACCTGGTG
GTACTGGTGATAGTGATTCAAAGACCGCCAATGAGGCAATTATCTTTTCATCAAAGGTAT
CAACTACTGACCGTCAAGAAAGTATCATTGGTCAAGTTGCTATAACTGCTAAAGATTCTT
TGGGTGCA----------TGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGT
TGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATT
AGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACT
TAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGT
TGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACA
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATCAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -