>CHJ796 (CHJ796Q) /CSM/CH/CHJ7-D/CHJ796Q.Seq.d/
XXXXXXXXXXGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGANTCACAGT
ATTNTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGG
TTA

---NGIQDAGEPGISGXTVXLIYGQQSTPTSQTVSDSNG

Frame A:
---vmvfkmlvnlvfqxsqyx*smvnnqlqqvklypiqmv


Frame B:
---*wysrcw*twyfrxhsixnlwstinsnksncirfkwl


Frame C:
---NGIQDAGEPGISGXTVXLIYGQQSTPTSQTVSDSNG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        212   8e-55
SSK275 (SSK275Q) /CSM/SS/SSK2-D/SSK275Q.Seq.d/                        212   8e-55
SSJ221 (SSJ221Q) /CSM/SS/SSJ2-A/SSJ221Q.Seq.d/                        212   8e-55
SSI677 (SSI677Q) /CSM/SS/SSI6-D/SSI677Q.Seq.d/                        212   8e-55
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                        212   8e-55
SSF888 (SSF888Q) /CSM/SS/SSF8-D/SSF888Q.Seq.d/                        212   8e-55
SSF392 (SSF392Q) /CSM/SS/SSF3-D/SSF392Q.Seq.d/                        212   8e-55
SSF149 (SSF149Q) /CSM/SS/SSF1-C/SSF149Q.Seq.d/                        212   8e-55
SSE643 (SSE643Q) /CSM/SS/SSE6-B/SSE643Q.Seq.d/                        212   8e-55
SSE121 (SSE121Q) /CSM/SS/SSE1-A/SSE121Q.Seq.d/                        212   8e-55

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.031  1
BX263864|BX263864.3 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0009c.b.04, 5prim end (M13R primer).    36   0.47   2
BX263863|BX263863.3 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0009c.b.04, 3prim end (M13F primer).    36   0.47   2
AF239838|AF239838.1 Gallus gallus collagen IV a1 chain mRNA, partial cds.    36   2.6    2
CG427919|CG427919.1 01S0783-05A1-B03 UniformMu MuTAIL Library Zea mays genomic clone 01S0783-05A1-B03, genomic survey sequence.    30   5.5    2
AC122833|AC122833.2 Mus musculus clone RP23-181J12, complete sequence.    40   7.5    1
AF410481|AF410481.1 Gallus gallus egg white lysozyme and GAS41 (GAS41) genes, regulatory regions and complete cds.    40   7.5    1
BA000031|BA000031.2 Vibrio parahaemolyticus DNA, chromosome 1, complete sequence.    40   7.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    40   0.024
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    39   0.071
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    38   0.093
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    35   0.79
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    35   0.79
CP000239_181(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp...    33   2.3
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    33   2.3
AY714838_16(AY714838|pid:none) Uncultured archaeon GZfos1D1 clon...    33   3.9
CP000477_1653(CP000477|pid:none) Methanosaeta thermophila PT, co...    33   3.9
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    33   3.9

 psg: 0.75  gvh: 0.48  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHJ796 is cyt

>CHJ796Z.Seq
NNNNNNNNNNGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGANTCACAGT
ATTNTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGG
TTA