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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHJ780
Library CH
(Link to library)
Clone ID CHJ780
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHJ780 (CHJ780Q) /CSM/CH/CHJ7-D/CHJ780Q.Seq.d/
ATTCAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTTTANTAG
GTTTNAAAAGGGNNTAGTTTTAANAAAAAAAAAAAAAANCCCCNTTTTTTTTTTNTTAAA
AAAAANNAAAAANNAAAAAAAAAAAAANAAAAAAAAANNNNNNNNNCCNTNCCCCGGGGG
CTTNAAAAAAAAAAAAANNTTTNAAAAAAAAANAAAAAANTTTNAAAAAAAAAAAAAAAA
NAAAAAAAAACNTTTTAANCCCCCCNNNNNNTTTTTGGGGGNCNTTNNAAAANAAANGNN
NGGGGGGNNNNNCCCCCCNTTNNTTNNGNNNNCNNCCCCCNNCCCNAAAAANNTTGGNCC
CCCCNNAAAANGGNCCCCNAAANTNCCCNGGGGGGAACCCCNNNANTTTNTTNGNNNCTT
TTTNAAANGNNAAANCCCNTTTTTNNNAAAAAAANTTTTTTAAAAAAAAAAAAANNNAAA
AAAACTTTTTTTNANNTTTTTTTTTAAAAANCCNTTTNAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
fknvk*IKKKKKKIKKNFXRFXKGXVLXKKKKXPXFFXLKKXKXXKKKXKKKXXXPXPGG
XKKKKXFXKKXKXFXKKKKXKKKXFXPPXXFLGXXXKXXXGGXXPPXXXXXXPXPKXXGP
PXKXXPKXPXGEPXXFXXXFXKXXXPFXXKKXF*kkkxxkklfxxfffkxpfxkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
iqkcqinkkkkkkn*kkfx*vxkgxsfxkkkkxpxfffxkkxxkxkkkkxkkxxxxxprg
lxkkkxxxkkxkkxxkkkkkxkktf*xpxxxfggxxkxxxxgxxppxxxxxxpxpxkxwx
pxkxxpxxxxggtpxxxxxlfxxxxpxfxkkxflkkkkxkktffxxff*kxxxkk---


Frame B:
fknvk*IKKKKKKIKKNFXRFXKGXVLXKKKKXPXFFXLKKXKXXKKKXKKKXXXPXPGG
XKKKKXFXKKXKXFXKKKKXKKKXFXPPXXFLGXXXKXXXGGXXPPXXXXXXPXPKXXGP
PXKXXPKXPXGEPXXFXXXFXKXXXPFXXKKXF*kkkxxkklfxxfffkxpfxkk---


Frame C:
skmsnk*kkkkkklkkilxgxkrx*f*xkkkkxpfffx*kkxkxkkkkxkkxxxxxxpga
xkkkkxxkkkxkxxkkkkkxkknxlxppxxfwgxxxxkxxggxxpxxxxxxppxxkxlxp
pxxgpxxxpggnpxxxxxxfxxxkxxfxxkxffkkkkxxknffxxfflkxxxkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ166 (VHQ166Q) /CSM/VH/VHQ1-C/VHQ166Q.Seq.d/                         42   0.009
VHK705 (VHK705Q) /CSM/VH/VHK7-A/VHK705Q.Seq.d/                         42   0.009
SHL660 (SHL660Q) /CSM/SH/SHL6-C/SHL660Q.Seq.d/                         42   0.009
SHL551 (SHL551Q) /CSM/SH/SHL5-C/SHL551Q.Seq.d/                         42   0.009
SHL312 (SHL312Q) /CSM/SH/SHL3-A/SHL312Q.Seq.d/                         42   0.009
SHH816 (SHH816Q) /CSM/SH/SHH8-A/SHH816Q.Seq.d/                         42   0.009
SHH504 (SHH504Q) /CSM/SH/SHH5-A/SHH504Q.Seq.d/                         42   0.009
SHH380 (SHH380Q) /CSM/SH/SHH3-D/SHH380Q.Seq.d/                         42   0.009
SHG883 (SHG883Q) /CSM/SH/SHG8-D/SHG883Q.Seq.d/                         42   0.009
SHG872 (SHG872Q) /CSM/SH/SHG8-C/SHG872Q.Seq.d/                         42   0.009
own update 2002. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                     42   9.6    1
dna update 2002.11.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT051012_1(BT051012|pid:none) Medicago truncatula clone MTYFD_FE...    50   4e-05
BT050756_1(BT050756|pid:none) Medicago truncatula clone MTYF5_F6...    49   8e-05
AK127997_1(AK127997|pid:none) Homo sapiens cDNA FLJ46115 fis, cl...    47   3e-04
BT050794_1(BT050794|pid:none) Medicago truncatula clone MTYF5_F6...    46   5e-04
BC111290_1(BC111290|pid:none) Bos taurus alcohol dehydrogenase 1...    45   9e-04
AM269894_60(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    45   0.001
BT051163_1(BT051163|pid:none) Medicago truncatula clone MTYFT1G-...    45   0.001
BT050940_1(BT050940|pid:none) Medicago truncatula clone MTYFD_FE...    44   0.002
BT050752_1(BT050752|pid:none) Medicago truncatula clone MTYF5_F6...    44   0.002
BT050875_1(BT050875|pid:none) Medicago truncatula clone MTYF9_FA...    44   0.002
protein update 2009. 4. 3
PSORT 

 psg: 0.57  gvh: 0.22  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.97  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHJ780 is nuc
5' end seq. ID CHJ780F
5' end seq. 
>CHJ780F.Seq
ATTCAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTTTANTAG
GTTTNAAAAGGGNNTAGTTTTAANAAAAAAAAAAAAAANCCCCNTTTTTTTTTTNTTAAA
AAAAANNAAAAANNAAAAAAAAAAAAANAAAAAAAAANNNNNNNNNCCNTNCCCCGGGGG
CTTNAAAAAAAAAAAAANNTTTNAAAAAAAAANAAAAAANTTTNAAAAAAAAAAAAAAAA
NAAAAAAAAACNTTTTAANCCCCCCNNNNNNTTTTTGGGGGNCNTTNNAAAANAAANGNN
NGGGGGGNNNNNCCCCCCNTTNNTTNNGNNNNCNNCCCCCNNCCCNAAAAANNTTGGNCC
CCCCNNAAAANGGNCCCCNAAANTNCCCNGGGGGGAACCCCNNNANTTTNTTNGNNNCTT
TTTNAAANGNNAAANCCCNTTTTTNNNAAAAAAANTTTTTTAAAAAAAAAAAAANNNAAA
AAAACTTTTTTTNANNTTTTTTTTTAAAAANCCNTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 537
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -