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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ721
Library CH
(Link to library)
Clone ID CHJ721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15639-1
Original site URL
Representative seq. ID CHJ721P
(Link to Original site)
Representative DNA sequence 
>CHJ721 (CHJ721Q) /CSM/CH/CHJ7-A/CHJ721Q.Seq.d/
ATTTTTTTTTTATTTTTTATTTTTTTTTTTATAAAANCTAATTATAATAAATAATTTTTT
ATTACATTATTTNATTTTTTTTNATTTTTTTNATTTTTTTNAAAAATTTTAAATAAAAAT
NTTANCAAATNTTATTNAATTNATTNATTTTTTATATNTATANAAAATATAAATTTATTT
TTTTTTAAAAANAAAAANAAAAAAAAGAAAAAAATNGNCAANTAAAAAAAAAAXXXXXXX
XXXTTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTANACT
CTTTTGGTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCT
TTGNAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAA
CTTTGGTACTTCCAGCTTGTTTNGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTA
TAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATC
TCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTNTGGCTC
TCATTAAACAAACTAAAGATTTCAATTNTGAACATTCACTCGCAACTTTCCTCAATCAAT
CTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAAGGTATTGTGA
AAGCATAAATC
sequence update 2002.10.25
Translated Amino Acid sequence 
fffyflfffl*xliiinnfllhyxiffxffxffxkf*ikxlxnxixxixflyxxki*IYF
FLKXKXKKRKKXXXKKK---

---LPSTPEALTNINSEKNIXLFW*k*yslts*igitsrdslxnl**in*nrsklfi*fs
fnfgtsslfxsskeyc*icklynaihskskifqstkssifssl*sr*icqsln*s*sktx
gsh*tn*rfqx*tftrnfpqsicnstne*ss*if*sfrrycesin
Translated Amino Acid sequence (All Frames) 
Frame A:
ifflffifffikxnynk*ffitlfxffxffxffxkilnknxxkxyxixxffixixninlf
ffkxkxkkkkkxxx*kk---

---ftidsrgfnky*l*keyxtllvkvifshqlnwnhvkrfslxfiinqlkskqtlymi*
fqlwyfqlvxlikrillnl*tl*chsfkvknlsvnqiinilislkslnlsis*lkliknx
wlslnklkisixnihsqlssinl*fhk*mkfvnflii*kvl*khk

Frame B:
fffyflfffl*xliiinnfllhyxiffxffxffxkf*ikxlxnxixxixflyxxki*IYF
FLKXKXKKRKKXXXKKK---

---LPSTPEALTNINSEKNIXLFW*k*yslts*igitsrdslxnl**in*nrsklfi*fs
fnfgtsslfxsskeyc*icklynaihskskifqstkssifssl*sr*icqsln*s*sktx
gsh*tn*rfqx*tftrnfpqsicnstne*ss*if*sfrrycesin

Frame C:
fffifyfffykx*l**iifyyiixffxifxifxknfk*kxxqxlxnxxifyxyxkykfif
f*kxkxkkeknxqxkkk---

---yhrlqrl*qiltlkrilxsfgesnilspvelesrqeilfxiynksikieanslydlv
stlvlpacxahqkniaesvnsimpfiqsqksfsqpnhqyshlsevvesvnllieanqklx
alikqtkdfnxehslatflnqsvipqmnevrkfsdhlegivka*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ721 (CHJ721Q) /CSM/CH/CHJ7-A/CHJ721Q.Seq.d/                        938   0.0
CHS409 (CHS409Q) /CSM/CH/CHS4-A/CHS409Q.Seq.d/                        894   0.0
CHL842 (CHL842Q) /CSM/CH/CHL8-B/CHL842Q.Seq.d/                        894   0.0
CHL605 (CHL605Q) /CSM/CH/CHL6-A/CHL605Q.Seq.d/                        894   0.0
CHG548 (CHG548Q) /CSM/CH/CHG5-B/CHG548Q.Seq.d/                        894   0.0
VSC707 (VSC707Q) /CSM/VS/VSC7-A/VSC707Q.Seq.d/                        888   0.0
VFM786 (VFM786Q) /CSM/VF/VFM7-D/VFM786Q.Seq.d/                        888   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                        888   0.0
CHQ139 (CHQ139Q) /CSM/CH/CHQ1-B/CHQ139Q.Seq.d/                        888   0.0
CHM692 (CHM692Q) /CSM/CH/CHM6-D/CHM692Q.Seq.d/                        888   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.012  11
AC108750|AC108750.3 Homo sapiens 3 BAC RP11-249L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    52   0.014  1
AX348601|AX348601.1 Sequence 59 from Patent WO0202807.             40   0.021  3
AX344198|AX344198.1 Sequence 45 from Patent WO0200926.             40   0.021  3
AX251812|AX251812.1 Sequence 73 from Patent WO0168911.             40   0.021  3
AX251061|AX251061.1 Sequence 29 from Patent WO0168912.             40   0.021  3
BD460276|BD460276.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.021  3
BD452582|BD452582.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes.    40   0.021  3
BD452198|BD452198.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.021  3
CR388368|CR388368.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-21E5.    40   0.025  5
dna update 2005. 1.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   259   5e-74
CP001101_909(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...    67   7e-10
CP000096_1380(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    66   1e-09
CP001108_1475(CP001108|pid:none) Prosthecochloris aestuarii DSM ...    65   2e-09
CP000108_1564(CP000108|pid:none) Chlorobium chlorochromatii CaD3...    65   3e-09
CP001099_742(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...    63   8e-09
CP001097_890(CP001097|pid:none) Chlorobium limicola DSM 245, com...    63   1e-08
AP010656_521(AP010656|pid:none) Candidatus Azobacteroides pseudo...    62   2e-08
CP001110_1640(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    62   2e-08
CP000607_1213(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    61   3e-08
protein update 2009. 4. 3
PSORT 

 psg: 0.26  gvh: 0.32  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHJ721 is nuc
5' end seq. ID CHJ721F
5' end seq. 
>CHJ721F.Seq
ATTTTTTTTTTATTTTTTATTTTTTTTTTTATAAAANCTAATTATAATAAATAATTTTTT
ATTACATTATTTNATTTTTTTTNATTTTTTTNATTTTTTTNAAAAATTTTAAATAAAAAT
NTTANCAAATNTTATTNAATTNATTNATTTTTTATATNTATANAAAATATAAATTTATTT
TTTTTTAAAAANAAAAANAAAAAAAAGAAAAAAATNGNCAANTAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 243
3' end seq. ID CHJ721Z
3' end seq. 
>CHJ721Z.Seq
NNNNNNNNNNTTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATA
TTANACTCTTTTGGTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAG
ATTCTCTTTGNAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTA
GTTTCAACTTTGGTACTTCCAGCTTGTTTNGCTCATCAAAAGAATATTGCTGAATCTGTA
AACTCTATAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATAT
TCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTT
NTGGCTCTCATTAAACAAACTAAAGATTTCAATTNTGAACATTCACTCGCAACTTTCCTC
AATCAATCTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAAGGT
ATTGTGAAAGCATAAATC
Length of 3' end seq. 498
Connected seq. ID CHJ721P
Connected seq. 
>CHJ721P.Seq
ATTTTTTTTTTATTTTTTATTTTTTTTTTTATAAAANCTAATTATAATAAATAATTTTTT
ATTACATTATTTNATTTTTTTTNATTTTTTTNATTTTTTTNAAAAATTTTAAATAAAAAT
NTTANCAAATNTTATTNAATTNATTNATTTTTTATATNTATANAAAATATAAATTTATTT
TTTTTTAAAAANAAAAANAAAAAAAAGAAAAAAATNGNCAANTAAAAAAAAAA-------
---TTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTANACT
CTTTTGGTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCT
TTGNAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAA
CTTTGGTACTTCCAGCTTGTTTNGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTA
TAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATC
TCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTNTGGCTC
TCATTAAACAAACTAAAGATTTCAATTNTGAACATTCACTCGCAACTTTCCTCAATCAAT
CTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAAGGTATTGTGA
AAGCATAAATC
Length of connected seq. 721
Full length Seq ID -
Full length Seq. -
Length of full length seq. -