>CHJ680 (CHJ680Q) /CSM/CH/CHJ6-D/CHJ680Q.Seq.d/
XXXXXXXXXXCNGNAGGTAATAGCGGCGGTGCTACTGGAGGTAATAGCGGGGGTGCTNCG
GGAGGCAATAGTGGAGGTGCNACAGGTGGTANCAGTGGAGGTGCTACTGAAGGAAATAGT
GGAGGTANCAGTGGTGCNTCATCTNCAGGAGGTAATAGCGGGTTGGTTANCAGGTGGTGC
TACTGGTGGTAATAGTGGAGGTGCTACTGGAGGAAATAGTGGCGGCTGCAACCGGAGGAA
ATAGTGGTGCTACTGGTGGTAATAGTGGAGGAAATAGTGGCGCTGCAACCGGAGGAAATA
TTGGAGGTGCTTCAAGTGGTTCCAGTTCTTCAGGAGGTAATAGCGGTTGGTTAACAGGAG
GCGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAG
GTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGNNCCCCCATAGGTGN
AGGTCCCTATATGTTTTGTANCCCGTGAGGCAANNNCTGNATCTTNATTNNAANGCTGCN
GCTNTNCCAAATANNGGNNNTNCNACTGGAGCNNATAGNGNTNNTGCAANTGG

---xr**rrcywr**rgcxgrq*wrcxrwxqwrcy*rk*wrxqwcxixrr**RVGXQVVL
LVVIVEVLLEEIVAAATGGNSGATGGNSGGNSGAATGGNIGGASSGSSSSGGNSGWLTGG
ATGGNSGGATGGNSGGATGGNSGGATGGNSGGATXPP*vxvpicfvxreaxxxsxxxxcx
xxkxxxxxwsx*xxcxw

Frame A:
---xr**rrcywr**rgcxgrq*wrcxrwxqwrcy*rk*wrxqwcxixrr**RVGXQVVL
LVVIVEVLLEEIVAAATGGNSGATGGNSGGNSGAATGGNIGGASSGSSSSGGNSGWLTGG
ATGGNSGGATGGNSGGATGGNSGGATGGNSGGATXPP*vxvpicfvxreaxxxsxxxxcx
xxkxxxxxwsx*xxcxw


Frame B:
---xgnsggatggnsggaxggnsggatggxsggategnsggxsgassxggnsglvxrwcy
ww**wrcywrk*wrlqpeeivvllvviveeivalqpeeilevlqvvpvlqeviavg*qea
llevivavllevivavllevivavllevivevllxphrxrslyvlxpvrqxlxlxxxaaa
xpnxgxxtgaxxxxax


Frame C:
---xviaavlleviagvlreaivevxqvvxvevllkeivevxvvxhlqeviagwlxggat
ggnsggatggnsggcnrrk*wcyww**wrk*wrcnrrkywrcfkwfqffrr**rlvnrrr
ywr**wrcywr**wrcywr**wrcywr**wrcyxxpigxgpymfcxp*gxxxixixxlxl
xqixxxxlexixxxqx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ680 (CHJ680Q) /CSM/CH/CHJ6-D/CHJ680Q.Seq.d/                        938   0.0
SLE356 (SLE356Q) /CSM/SL/SLE3-C/SLE356Q.Seq.d/                        797   0.0
SLG686 (SLG686Q) /CSM/SL/SLG6-D/SLG686Q.Seq.d/                        789   0.0
SLA520 (SLA520Q) /CSM/SL/SLA5-A/SLA520Q.Seq.d/                        672   0.0
SLJ545 (SLJ545Q) /CSM/SL/SLJ5-B/SLJ545Q.Seq.d/                        611   e-174
SLK148 (SLK148Q) /CSM/SL/SLK1-B/SLK148Q.Seq.d/                        567   e-161
SLB441 (SLB441Q) /CSM/SL/SLB4-B/SLB441Q.Seq.d/                        486   e-136
SSE746 (SSE746Q) /CSM/SS/SSE7-B/SSE746Q.Seq.d/                        440   e-122
SHC194 (SHC194Q) /CSM/SH/SHC1-D/SHC194Q.Seq.d/                        418   e-116
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/                        398   e-110

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC154316|AC154316.1 Mus musculus chromosome 14 clone RP23-338D3, WORKING DRAFT SEQUENCE, 6 unordered pieces.    50   0.044  1
CK484352|CK484352.1 ai_G000.54 Bay Scallop spat whole body ZAP Express Library Argopecten irradians cDNA 5' similar to agCP3542 [Anopheles gambiae str. PEST], mRNA sequence.    34   0.13   2
CK484538|CK484538.1 ai_L000.48 Bay Scallop spat whole body ZAP Express Library Argopecten irradians cDNA 5' similar to agCP3542 [Anopheles gambiae str. PEST], mRNA sequence.    34   0.13   2
CK484479|CK484479.1 ai_K000.07 Bay Scallop spat whole body ZAP Express Library Argopecten irradians cDNA 5', mRNA sequence.    34   0.13   2
BW468805|BW468805.1 Ciona intestinalis cDNA, clone:cijv410p02, 3'end, single read.    48   0.17   1
BW468399|BW468399.1 Ciona intestinalis cDNA, clone:cijv408n16, 3'end, single read.    48   0.17   1
BW442558|BW442558.1 Ciona intestinalis cDNA, clone:cijv408n16, 5'end, single read.    48   0.17   1
BW467001|BW467001.1 Ciona intestinalis cDNA, clone:cijv425e13, 3'end, single read.    48   0.17   1
BW443022|BW443022.1 Ciona intestinalis cDNA, clone:cijv410p02, 5'end, single read.    48   0.17   1
BU006699|BU006699.1 QGH12B17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGH12B17, mRNA sequence.    36   0.68   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 189,088,676

 psg: 0.98  gvh: 0.50  alm: 0.19  top: 0.27  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for CHJ680 is end

>CHJ680Z.Seq
NNNNNNNNNNCNGNAGGTAATAGCGGCGGTGCTACTGGAGGTAATAGCGGGGGTGCTNCG
GGAGGCAATAGTGGAGGTGCNACAGGTGGTANCAGTGGAGGTGCTACTGAAGGAAATAGT
GGAGGTANCAGTGGTGCNTCATCTNCAGGAGGTAATAGCGGGTTGGTTANCAGGTGGTGC
TACTGGTGGTAATAGTGGAGGTGCTACTGGAGGAAATAGTGGCGGCTGCAACCGGAGGAA
ATAGTGGTGCTACTGGTGGTAATAGTGGAGGAAATAGTGGCGCTGCAACCGGAGGAAATA
TTGGAGGTGCTTCAAGTGGTTCCAGTTCTTCAGGAGGTAATAGCGGTTGGTTAACAGGAG
GCGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAG
GTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGNNCCCCCATAGGTGN
AGGTCCCTATATGTTTTGTANCCCGTGAGGCAANNNCTGNATCTTNATTNNAANGCTGCN
GCTNTNCCAAATANNGGNNNTNCNACTGGAGCNNATAGNGNTNNTGCAANTGG