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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ601
Library CH
(Link to library)
Clone ID CHJ601
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHJ601 (CHJ601Q) /CSM/CH/CHJ6-A/CHJ601Q.Seq.d/
XXXXXXXXXXAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGT
GTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATC
AATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCA
ACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGGTTNTGN
TGATGAAGAAGNTATTGATGAAGATNTCAATGGTAATGATGAATTTGAAANNGATGTTGA
AGGTGANNTCCAAGAAGATNATTTCGAANAAGAATANGCATTTTATTCAATTANACTTTT
TTTCATAAAAAAATAATAATAATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---CLTCKDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHST
ASTIASLVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRXX*
*rxy**rxqw***i*xxc*r*xprrxfrxrixilfnxtffhkkiiii
Translated Amino Acid sequence (All Frames) 
Frame A:
---mshl*ryal*vkwitlcldstked**rmlsnysnlyqsinycrihychyncinssln
clnnclishwyhkwwwwygfiwwsir*rik*skcytwsl*rryflg****il***lpvxx
mkkxlmkxsmvmmnlkxmlkvxskkxisxknxhfiqlxffs*knnnn


Frame B:
---CLTCKDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHST
ASTIASLVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRXX*
*rxy**rxqw***i*xxc*r*xprrxfrxrixilfnxtffhkkiiii


Frame C:
---vslvkicivsqmdysvs*lhkrrlmknvvqlfqsvsihqllphpllplqlhqlvtql
pqqlph*slvpqvvvvvwvhlvvdpmknqviqmlylvslktifsgvimmntlvittgxxd
eexidedxngndefexdvegxxqedxfexexafysixlffikk***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ601 (CHJ601Q) /CSM/CH/CHJ6-A/CHJ601Q.Seq.d/                        852   0.0
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        829   0.0
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        829   0.0
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        829   0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        829   0.0
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/                        829   0.0
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/                        829   0.0
SSF386 (SSF386Q) /CSM/SS/SSF3-D/SSF386Q.Seq.d/                        829   0.0
SSF203 (SSF203Q) /CSM/SS/SSF2-A/SSF203Q.Seq.d/                        829   0.0
SSE674 (SSE674Q) /CSM/SS/SSE6-D/SSE674Q.Seq.d/                        829   0.0
own update 2004. 7.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 mapcomplement(3622543-3568102) strain AX4, complete sequence.   680   0.0    2
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   680   0.0    2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.34   8
AZ085701|AZ085701.1 RPCI-23-452C13.TV RPCI-23 Mus musculus genomic clone RPCI-23-452C13, genomic survey sequence.    32   0.43   3
BC005670|BC005670.1 Mus musculus tudor domain containing 3, mRNA (cDNA clone MGC:11761 IMAGE:3153274), complete cds.    36   0.54   3
BD454036|BD454036.1 NOVEL DNA POLYMERASE III HOLOENZYME DELTA SUBUNIT NUCLEIC ACID MOLECULES AND PROTEINS.    40   1.1    2
BD454035|BD454035.1 NOVEL DNA POLYMERASE III HOLOENZYME DELTA SUBUNIT NUCLEIC ACID MOLECULES AND PROTEINS.    40   1.1    2
AC151520|AC151520.3 Medicago truncatula chromosome 2 BAC clone mte1-34o12, complete sequence.    38   1.4    4
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   2.0    7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38   2.4    7
dna update 2005. 1.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   115   7e-27
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    36   0.44
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    36   0.44
protein update 2009. 1. 2
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHJ601 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHJ601Z
3' end seq. 
>CHJ601Z.Seq
NNNNNNNNNNAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGT
GTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATC
AATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCA
ACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGGTTNTGN
TGATGAAGAAGNTATTGATGAAGATNTCAATGGTAATGATGAATTTGAAANNGATGTTGA
AGGTGANNTCCAAGAAGATNATTTCGAANAAGAATANGCATTTTATTCAATTANACTTTT
TTTCATAAAAAAATAATAATAATA
Length of 3' end seq. 504
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -