CHJ502
Library CH
(Link to library)
Clone ID CHJ502
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11803-1
Original site URL
Representative seq. ID CHJ502P
(Link to Original site)
Representative DNA sequence
>CHJ502 (CHJ502Q) /CSM/CH/CHJ5-A/CHJ502Q.Seq.d/
AATAGTAACCGACATCCAATAAGTGGAATTTCAAGAGCCTTACAAATAAACCAATCCCTT
CGTCATATTGATCTTTCATTTATGTCAATTGCACCACAAGAATCGACTGAGCTAATTAAA
ACTTTAATTGGGTCAAGATTTTTAACATCAATTAATCTTCAACAAACTTTACTTTCAACT
GTTGGCGAAACCTTTGGAATTAGTATCGTAAATTCATTAGCCAAACGTTATAATGACTAC
GACTTGGATGAAGAAGATGGATGTTTAAGTTTTGTTGATTCTAAAAGTAGTACTACAACG
ACAACAAATACTAATACTACTACTATTCCATTGGATCCAAACTCTCAAAATACTAGTGCA
AATTCAATTTGTTTCACACCAAGTTGTTCATTCTCCTCTTCAAAATCATCATTAGAAGAT
GATGAATTTTATATTGCACCTCATAATCCAATTTTAAATTTAAATTTGGATGGTATTAAT
TTTGGTAAAAAAGCATTAAAATCATTTTTAAATATTTTAGCAAGAAATCAAGATTTAACT
GAACTTGATCTAAGTTCAAATCAATTATGTGAAAGCAATGGTACCTATTTGGCAGACXXX
XXXXXXXCAGTACCAACGAATATTCATAATAATAATTCATTTTATGGTGGTCATAATATA
CCATGCACTTATAGACCTGGTACAGGTTCATCAAATAATTCACCAACCACAAATAATGTA
CCATTCTATCCATTTGGAAATGTATCAATGTCTAGTCCTTCTACTCCACGTGGATTTCCA
ACAACACCAAACTCAATGAATACACCAACTGCAATTAGATTCCCATCACAAAGTAATTTA
CCTATTACTCCACGTGCTCAATATCAACAACAATACATCCAATATCATCAACAATTACAA
TTACAACAACAACAACAACAACAACAACAAAATCAACAATTACAAAAACAATTACAACAA
TTAGAACAACAACAACAATTTCAACAATTATTACCATCTTCATCATCAGCCCAATCAACA
AAAGTTATTACACAAGGTGGTAGTATGAAATCTCCAACTTCCTCTTCTGCAAAACCAAGT
TTATTTTATATTCCATTTGAACAAAAACAACAATTACAACAACAACAACAACAATTACTA
CAACAACAACAACAATTACAACAACAAAATTAATTATTTATTTTATTTATTTATTTTAAT
TCTAATTTTACTTTCTTTAAAACAT
sequence update 2002.10.25
Translated Amino Acid sequence
NSNRHPISGISRALQINQSLRHIDLSFMSIAPQESTELIKTLIGSRFLTSINLQQTLLST
VGETFGISIVNSLAKRYNDYDLDEEDGCLSFVDSKSSTTTTTNTNTTTIPLDPNSQNTSA
NSICFTPSCSFSSSKSSLEDDEFYIAPHNPILNLNLDGINFGKKALKSFLNILARNQDLT
ELDLSSNQLCESNGTYLAD---

---VPTNIHNNNSFYGGHNIPCTYRPGTGSSNNSPTTNNVPFYPFGNVSMSSPSTPRGFP
TTPNSMNTPTAIRFPSQSNLPITPRAQYQQQYIQYHQQLQLQQQQQQQQQNQQLQKQLQQ
LEQQQQFQQLLPSSSSAQSTKVITQGGSMKSPTSSSAKPSLFYIPFEQKQQLQQQQQQLL
QQQQQLQQQN*lfilfiyfnsnftffkt


Translated Amino Acid sequence (All Frames)
Frame A:
NSNRHPISGISRALQINQSLRHIDLSFMSIAPQESTELIKTLIGSRFLTSINLQQTLLST
VGETFGISIVNSLAKRYNDYDLDEEDGCLSFVDSKSSTTTTTNTNTTTIPLDPNSQNTSA
NSICFTPSCSFSSSKSSLEDDEFYIAPHNPILNLNLDGINFGKKALKSFLNILARNQDLT
ELDLSSNQLCESNGTYLAD---

---qyqrifiiiihfmvviiyhalidlvqvhqiihqpqimyhsihlemyqclvlllhvdf
qqhqtq*ihqlqldshhkviylllhvlninnntsniinnynynnnnnnnnkinnyknnyn
n*nnnnnfnnyyhlhhqpnqqkllhkvvv*nlqlpllqnqvyfifhlnknnnynnnnnny
ynnnnnynnkinylfylfililillslkh

Frame B:
ivtdiq*vefqepyk*tnpfvilifhlcqlhhknrls*lkl*lgqdf*hqlifnklyfql
lakplelvs*ih*pnvimtttwmkkmdv*vllilkvvlqrqqililllfhwiqtlkilvq
iqfvshqvvhsplqnhh*kmmnfilhliiqf*i*iwmvlilvkkh*nhf*if*qeiki*l
nli*vqinyvkamvpiwq---

---stneys***filwws*ytmhl*twyrfik*ftnhk*ctilsiwkcinv*sfystwis
nntklneytncn*ipitk*ftyystcsisttihpisstititttttttttkstitktitt
irttttistiitifiispinksyytrw*yeisnflfcktkfilysi*tkttittttttit
tttttitttkliiyfiylf*f*fyfl*n

Frame C:
**ptsnkwnfksltnkpipssy*sfiyvncttrid*an*nfnwvkifnin*sstnftfnc
wrnlwn*yrkfisqtl**lrlg*rrwmfkfc*f*k*yyndnky*yyyysigsklsky*ck
fnlfhtklfillfkiiirr**ilycts*snfkfkfgwy*fw*ksikiifkyfskksrfn*
t*skfksim*kqwylfgr---

---VPTNIHNNNSFYGGHNIPCTYRPGTGSSNNSPTTNNVPFYPFGNVSMSSPSTPRGFP
TTPNSMNTPTAIRFPSQSNLPITPRAQYQQQYIQYHQQLQLQQQQQQQQQNQQLQKQLQQ
LEQQQQFQQLLPSSSSAQSTKVITQGGSMKSPTSSSAKPSLFYIPFEQKQQLQQQQQQLL
QQQQQLQQQN*lfilfiyfnsnftffkt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHJ502 (CHJ502Q) /CSM/CH/CHJ5-A/CHJ502Q.Seq.d/ 888 0.0
CHO628 (CHO628Q) /CSM/CH/CHO6-B/CHO628Q.Seq.d/ 634 0.0
SHL836 (SHL836Q) /CSM/SH/SHL8-B/SHL836Q.Seq.d/ 509 e-143
SHL260 (SHL260Q) /CSM/SH/SHL2-C/SHL260Q.Seq.d/ 509 e-143
SHK208 (SHK208Q) /CSM/SH/SHK2-A/SHK208Q.Seq.d/ 509 e-143
SHG123 (SHG123Q) /CSM/SH/SHG1-A/SHG123Q.Seq.d/ 509 e-143
SSC102 (SSC102Q) /CSM/SS/SSC1-A/SSC102Q.Seq.d/ 502 e-141
SHH205 (SHH205Q) /CSM/SH/SHH2-A/SHH205Q.Seq.d/ 490 e-137
VFI814 (VFI814Q) /CSM/VF/VFI8-A/VFI814Q.Seq.d/ 40 0.078
SLH830 (SLH830Q) /CSM/SL/SLH8-B/SLH830Q.Seq.d/ 40 0.078

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC150440|AC150440.3 Medicago truncatula chromosome 7 BAC clone mth2-189e2, complete sequence. 42 2e-04 4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.002 12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 0.004 17
CR925728|CR925728.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-96G2. 46 0.005 7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 34 0.005 9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 30 0.020 20
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 38 0.022 13
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 34 0.025 10
AG572135|AG572135.1 Mus musculus molossinus DNA, clone:MSMg01-494P18.T7, genomic survey sequence. 38 0.026 2
AC152123|AC152123.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B21F5, complete sequence. 40 0.035 5
dna update 2005. 1.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5DU56) RecName: Full=Protein NLRC3; 37 1.0
CR628337_2326(CR628337|pid:none) Legionella pneumophila str. Len... 37 1.0
CR628336_1944(CR628336|pid:none) Legionella pneumophila str. Par... 37 1.0
AK079766_1(AK079766|pid:none) Mus musculus 0 day neonate thymus ... 37 1.0
BC166378_1(BC166378|pid:none) Xenopus tropicalis hypothetical pr... 37 1.0
BC160196_1(BC160196|pid:none) Synthetic construct Mus musculus c... 37 1.0
CU914168_1488(CU914168|pid:none) Ralstonia solanacearum strain I... 37 1.4
CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 36 2.3
EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 35 4.0
AM502254_692(AM502254|pid:none) Leishmania infantum chromosome 36. 35 4.0
protein update 2009. 4. 3
PSORT

psg: 0.68 gvh: 0.45 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.44 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: plasma membrane

>> prediction for CHJ502 is mit

5' end seq. ID CHJ502F
5' end seq.
>CHJ502F.Seq
AATAGTAACCGACATCCAATAAGTGGAATTTCAAGAGCCTTACAAATAAACCAATCCCTT
CGTCATATTGATCTTTCATTTATGTCAATTGCACCACAAGAATCGACTGAGCTAATTAAA
ACTTTAATTGGGTCAAGATTTTTAACATCAATTAATCTTCAACAAACTTTACTTTCAACT
GTTGGCGAAACCTTTGGAATTAGTATCGTAAATTCATTAGCCAAACGTTATAATGACTAC
GACTTGGATGAAGAAGATGGATGTTTAAGTTTTGTTGATTCTAAAAGTAGTACTACAACG
ACAACAAATACTAATACTACTACTATTCCATTGGATCCAAACTCTCAAAATACTAGTGCA
AATTCAATTTGTTTCACACCAAGTTGTTCATTCTCCTCTTCAAAATCATCATTAGAAGAT
GATGAATTTTATATTGCACCTCATAATCCAATTTTAAATTTAAATTTGGATGGTATTAAT
TTTGGTAAAAAAGCATTAAAATCATTTTTAAATATTTTAGCAAGAAATCAAGATTTAACT
GAACTTGATCTAAGTTCAAATCAATTATGTGAAAGCAATGGTACCTATTTGGCAGACNNN
NNNNNNN
Length of 5' end seq. 607
3' end seq. ID CHJ502Z
3' end seq.
>CHJ502Z.Seq
NNNNNNNNNNCAGTACCAACGAATATTCATAATAATAATTCATTTTATGGTGGTCATAAT
ATACCATGCACTTATAGACCTGGTACAGGTTCATCAAATAATTCACCAACCACAAATAAT
GTACCATTCTATCCATTTGGAAATGTATCAATGTCTAGTCCTTCTACTCCACGTGGATTT
CCAACAACACCAAACTCAATGAATACACCAACTGCAATTAGATTCCCATCACAAAGTAAT
TTACCTATTACTCCACGTGCTCAATATCAACAACAATACATCCAATATCATCAACAATTA
CAATTACAACAACAACAACAACAACAACAACAAAATCAACAATTACAAAAACAATTACAA
CAATTAGAACAACAACAACAATTTCAACAATTATTACCATCTTCATCATCAGCCCAATCA
ACAAAAGTTATTACACAAGGTGGTAGTATGAAATCTCCAACTTCCTCTTCTGCAAAACCA
AGTTTATTTTATATTCCATTTGAACAAAAACAACAATTACAACAACAACAACAACAATTA
CTACAACAACAACAACAATTACAACAACAAAATTAATTATTTATTTTATTTATTTATTTT
AATTCTAATTTTACTTTCTTTAAAACAT
Length of 3' end seq. 628
Connected seq. ID CHJ502P
Connected seq.
>CHJ502P.Seq
AATAGTAACCGACATCCAATAAGTGGAATTTCAAGAGCCTTACAAATAAACCAATCCCTT
CGTCATATTGATCTTTCATTTATGTCAATTGCACCACAAGAATCGACTGAGCTAATTAAA
ACTTTAATTGGGTCAAGATTTTTAACATCAATTAATCTTCAACAAACTTTACTTTCAACT
GTTGGCGAAACCTTTGGAATTAGTATCGTAAATTCATTAGCCAAACGTTATAATGACTAC
GACTTGGATGAAGAAGATGGATGTTTAAGTTTTGTTGATTCTAAAAGTAGTACTACAACG
ACAACAAATACTAATACTACTACTATTCCATTGGATCCAAACTCTCAAAATACTAGTGCA
AATTCAATTTGTTTCACACCAAGTTGTTCATTCTCCTCTTCAAAATCATCATTAGAAGAT
GATGAATTTTATATTGCACCTCATAATCCAATTTTAAATTTAAATTTGGATGGTATTAAT
TTTGGTAAAAAAGCATTAAAATCATTTTTAAATATTTTAGCAAGAAATCAAGATTTAACT
GAACTTGATCTAAGTTCAAATCAATTATGTGAAAGCAATGGTACCTATTTGGCAGAC---
-------CAGTACCAACGAATATTCATAATAATAATTCATTTTATGGTGGTCATAATATA
CCATGCACTTATAGACCTGGTACAGGTTCATCAAATAATTCACCAACCACAAATAATGTA
CCATTCTATCCATTTGGAAATGTATCAATGTCTAGTCCTTCTACTCCACGTGGATTTCCA
ACAACACCAAACTCAATGAATACACCAACTGCAATTAGATTCCCATCACAAAGTAATTTA
CCTATTACTCCACGTGCTCAATATCAACAACAATACATCCAATATCATCAACAATTACAA
TTACAACAACAACAACAACAACAACAACAAAATCAACAATTACAAAAACAATTACAACAA
TTAGAACAACAACAACAATTTCAACAATTATTACCATCTTCATCATCAGCCCAATCAACA
AAAGTTATTACACAAGGTGGTAGTATGAAATCTCCAACTTCCTCTTCTGCAAAACCAAGT
TTATTTTATATTCCATTTGAACAAAAACAACAATTACAACAACAACAACAACAATTACTA
CAACAACAACAACAATTACAACAACAAAATTAATTATTTATTTTATTTATTTATTTTAAT
TCTAATTTTACTTTCTTTAAAACAT
Length of connected seq. 1215
Full length Seq ID -
Full length Seq. -
Length of full length seq. -