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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ279
Library CH
(Link to library)
Clone ID CHJ279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID CHJ279P
(Link to Original site)
Representative DNA sequence 
>CHJ279 (CHJ279Q) /CSM/CH/CHJ2-D/CHJ279Q.Seq.d/
AAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCT
ATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXGGCTNTCATTTCCATTCCAGTTAT
GTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCNAAAGAAAGAA
ATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTNTACACTGGTCATCACGGTGA
AGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTT
GGGTGCTGTTTCAAATACTGCNTCTTATCTTCGTTTATGGGNTCTTTCATTGGCTCACTC
TGAGTTATCTTCTGTANTTTGGGAACGTATTNTCATTGGTCAAGTCGAACGTGGTAATCC
ANTNTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACT
TATGGAATCCCTTTNNGCTTTCTTGCACGCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
knylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---AXISIPVMLVIKPLFMKRFHFQEVXRKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWXLSLAHSELSSVXWERIXIGQVERGNPXLAFVGFGA
WLGASVAVLLLMESLXAFLHA
Translated Amino Acid sequence (All Frames) 
Frame A:
kklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---gxhfhssyvgh*tivheeiplprsxkkeirsprrgt***ssxhwssr*ri*ng*slc
ssshsyhrvcfgccfkycxlssfmgsfigsl*vifcxlgtyxhwssrtw*sxxgfrwfwc
lvrclccctftygipxxflar

Frame B:
knylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---AXISIPVMLVIKPLFMKRFHFQEVXRKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWXLSLAHSELSSVXWERIXIGQVERGNPXLAFVGFGA
WLGASVAVLLLMESLXAFLHA

Frame C:
kti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklxtlvitvknlkwvkslf
iksfipsslfwvlfqilxlifvygxfhwltlsyllxfgnvxslvksnvvixxwlslvlvl
g*vplllyfylwnpfxlsctl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ279 (CHJ279Q) /CSM/CH/CHJ2-D/CHJ279Q.Seq.d/                        759   0.0
AHD529 (AHD529Q) /CSM/AH/AHD5-B/AHD529Q.Seq.d/                        759   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        757   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        757   0.0
VHG103 (VHG103Q) /CSM/VH/VHG1-A/VHG103Q.Seq.d/                        757   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        757   0.0
SHK785 (SHK785Q) /CSM/SH/SHK7-D/SHK785Q.Seq.d/                        757   0.0
SHK527 (SHK527Q) /CSM/SH/SHK5-B/SHK527Q.Seq.d/                        757   0.0
SHJ856 (SHJ856Q) /CSM/SH/SHJ8-C/SHJ856Q.Seq.d/                        757   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                        757   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   757   0.0    2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   9e-12  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   5e-11  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   1e-08  1
CO099107|CO099107.1 GR__Ea23M21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23M21 5', mRNA sequence.    72   1e-08  1
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    72   1e-08  1
CO071051|CO071051.1 GR__Ea28H19.r GR__Ea Gossypium raimondii cDNA clone GR__Ea28H19 3', mRNA sequence.    72   1e-08  1
CO070907|CO070907.1 GR__Ea28D10.f GR__Ea Gossypium raimondii cDNA clone GR__Ea28D10 5', mRNA sequence.    72   1e-08  1
CO114093|CO114093.1 GR__Eb015A17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 5', mRNA sequence.    72   1e-08  1
CO121598|CO121598.1 GR__Eb02N16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 5', mRNA sequence.    72   1e-08  1
dna update 2005. 1. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   263   2e-69
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   263   2e-69
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   135   1e-30
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   133   3e-30
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   133   3e-30
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   133   3e-30
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   132   5e-30
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   132   6e-30
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   130   3e-29
AY123133_1(AY123133|pid:none) Griffithsia japonica vacuolar prot...   128   9e-29
protein update 2009. 4. 3
PSORT 

 psg: 0.85  gvh: 0.30  alm: 0.27  top: 0.50  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHJ279 is cyt
5' end seq. ID CHJ279F
5' end seq. 
>CHJ279F.Seq
AAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCT
ATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID CHJ279Z
3' end seq. 
>CHJ279Z.Seq
NNNNNNNNNNGGCTNTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGA
AGAGATTCCACTTCCAAGAAGTCNAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATG
ATGATGAAGCTCTNTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTG
TTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCNTCTT
ATCTTCGTTTATGGGNTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTANTTTGGGAAC
GTATTNTCATTGGTCAAGTCGAACGTGGTAATCCANTNTTGGCTTTCGTTGGTTTTGGTG
CTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTNNGCTTTCTTGC
ACGCTT
Length of 3' end seq. 426
Connected seq. ID CHJ279P
Connected seq. 
>CHJ279P.Seq
AAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCT
ATCATTTAATTTTAATAAAAAAAAAA----------GGCTNTCATTTCCATTCCAGTTAT
GTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCNAAAGAAAGAA
ATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTNTACACTGGTCATCACGGTGA
AGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTT
GGGTGCTGTTTCAAATACTGCNTCTTATCTTCGTTTATGGGNTCTTTCATTGGCTCACTC
TGAGTTATCTTCTGTANTTTGGGAACGTATTNTCATTGGTCAAGTCGAACGTGGTAATCC
ANTNTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACT
TATGGAATCCCTTTNNGCTTTCTTGCACGCTT
Length of connected seq. 562
Full length Seq ID -
Full length Seq. -
Length of full length seq. -