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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ256
Library CH
(Link to library)
Clone ID CHJ256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16458-1
Original site URL
Representative seq. ID CHJ256P
(Link to Original site)
Representative DNA sequence 
>CHJ256 (CHJ256Q) /CSM/CH/CHJ2-C/CHJ256Q.Seq.d/
TTGGCCTACTGGATTTATTTTCCTTCATATTATTAATTCTAATCAAATAAAAAATGAATA
AGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAA
CAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTC
CAACTCTTTTGGAAGACTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAA
TTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATA
AGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAG
TTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACG
TTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATA
ATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAA
AGATGGAACCACAGAATGAAATGCCAACTGGGGGGAAGTGCTCATGATACTTTTTATGAT
TTCTGTGGATTAAAACCAGAGAGTGCTCATAGCGTACTATGGGTAATGTCAGATCGTGGT
ATCCCAATTTCACTTCGTCATXXXXXXXXXXCAAGAAGATTATGGTAAAACCATCACCAG
CTTTATCTCAACCAAATTTATTATCTGGTGATATCGTTAGTCGTAGAATTTCAGTTATCA
TTGAAAAAGGTGTTGACTATGATGACGTTATCAATTTCAAAGATGATATGGAGAAAAGAG
GTGCAATGGTAATGTTAGTNTCTTCAACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAA
TGTTATCTCCAAAAGGTACAATCATTGGTAACCCTTCCATTTTCTTTGATGCAGTCTATG
TTCCAAAATCAACAGAAGAAGCCACTAAAATCCTNTCTGATGATGGTAATTTCCTTCATT
ACATTCTTGAAGCCTTTAAACATCTCAAAACCATTGCATTTGGTGGTTCTGTATCGGTGA
TTAAAGAATTACTTCGTTTACCTCAAGATCAGGTTTATTACTTGGTAAGGGTTATAAAGA
TATCACTGAACAATTCTTTTATTCACTTGCTCATCATCGTGTTTGGG
sequence update 2002.10.25
Translated Amino Acid sequence 
laywiyfpsyy*f*snkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*kqvqev
qlfwktlf*ekr*lilimkefqkelfmqeeqelmviffliriivn*qkqis*vnkirkhq
fsfvyqqfkdqedqliqfvtfmdll*nsiltkvimi*lviicqcflfkmqvhsqilymq*
RWNHRMKCQLGGSAHDTFYDFCGLKPESAHSVLWVMSDRGIPISLRH---

---KKIMVKPSPALSQPNLLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVMLVS
STLAQVECSGGEMLSPKGTIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEAFKH
LKTIAFGGSVSVIKELLRLPQDQVYYLVRVIKISLNNSFIHLLIIVFG
Translated Amino Acid sequence (All Frames) 
Frame A:
laywiyfpsyy*f*snkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*kqvqev
qlfwktlf*ekr*lilimkefqkelfmqeeqelmviffliriivn*qkqis*vnkirkhq
fsfvyqqfkdqedqliqfvtfmdll*nsiltkvimi*lviicqcflfkmqvhsqilymq*
RWNHRMKCQLGGSAHDTFYDFCGLKPESAHSVLWVMSDRGIPISLRH---

---qedygktitsfistkfiiw*yr*s*nfsyh*krc*l**ryqfqr*ygekrcngnvsx
fnfgtsrm*ww*nviskrynhw*pfhfl*cslcskinrrsh*npx**w*fpslhs*sl*t
sqnhciwwfcigd*ritsftsrsglllgkgykditeqffyslahhrvw

Frame B:
wptgfiflhiinsnqikne*eirtt*kiqnk**esslfnnkywcffir*ckfiksrskrs
nsfgrlcfkrkdnsf*s*knsrkncsckrnrsswlfsfl*gs**inksrfle*tr*ents
fhsyinssrtkris*yss*rswicceily*rr*l*ssw**yasvfysrckfiprfctcsk
dgtte*nanwgevlmilfmisvd*nqrvliayyg*cqivvsqfhfv---

---KKIMVKPSPALSQPNLLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVMLVS
STLAQVECSGGEMLSPKGTIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEAFKH
LKTIAFGGSVSVIKELLRLPQDQVYYLVRVIKISLNNSFIHLLIIVFG

Frame C:
glldlfsfillilik*kmnkkleqlekfktndknpvysttntgvslsddanslkagprgp
tlledfvlrekithfdheriperivhargtgahgyflsykdhskltkadflskqdkktpv
firistvqgprgsadtvrdvhgfavkfytdegnydlvgnnmpvffiqdassfpdfvhavk
mepqnemptggkcs*yfl*flwiktrecs*rtmgnvrswypnftss---

---rrlw*nhhqlylnqiyylvislvvefqlslkkvltmmtlsiskmiwrkevqw*c*xl
qlwhk*nvvvvkcylqkvqslvtlpfslmqsmfqnqqkkplksxlmmvisfitflkplni
skplhlvvlyr*lknyfvylkirfitw*gl*ryh*tillftcssscl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ256 (CHJ256Q) /CSM/CH/CHJ2-C/CHJ256Q.Seq.d/                       2093   0.0
CHO742 (CHO742Q) /CSM/CH/CHO7-B/CHO742Q.Seq.d/                       1154   0.0
CHI215 (CHI215Q) /CSM/CH/CHI2-A/CHI215Q.Seq.d/                       1140   0.0
SFD123 (SFD123Q) /CSM/SF/SFD1-A/SFD123Q.Seq.d/                       1138   0.0
CFI610 (CFI610Q) /CSM/CF/CFI6-A/CFI610Q.Seq.d/                       1138   0.0
AHL256 (AHL256Q) /CSM/AH/AHL2-C/AHL256Q.Seq.d/                       1130   0.0
AHB578 (AHB578Q) /CSM/AH/AHB5-D/AHB578Q.Seq.d/                       1126   0.0
AHM670 (AHM670Q) /CSM/AH/AHM6-C/AHM670Q.Seq.d/                       1108   0.0
CFH728 (CFH728Q) /CSM/CF/CFH7-B/CFH728Q.Seq.d/                       1088   0.0
SFD809 (SFD809Q) /CSM/SF/SFD8-A/SFD809Q.Seq.d/                       1086   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY386221|AY386221.1 Dictyostelium discoideum catalase B gene, complete cds.   821   0.0    6
AF183177|AF183177.1 Dictyostelium discoideum catalase B (catB) mRNA, partial cds.   821   0.0    4
CP000001|CP000001.1 Bacillus cereus ZK, complete genome.           90   4e-16  2
AE017000|AE017000.1 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome.    60   5e-11  10
AE017026|AE017026.1 Bacillus anthracis str. Ames section 3 of 18 of the complete genome.    58   2e-10  9
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome.    60   1e-09  2
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome.    58   1e-08  2
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome.    58   1e-08  2
L02551|L02551.1 B.firmus catalase (katA) gene, 5' end.             50   1e-06  2
AY571729|AY571729.1 Staphylococcus xylosus strain B7 catalase (katA) gene, partial cds.    52   2e-05  3
dna update 2005. 1. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DH8) RecName: Full=Catalase-B;          EC=1.11.1.6;              350   5e-95
AY386221_1(AY386221|pid:none) Dictyostelium discoideum catalase ...   273   7e-82
AF183177_1(AF183177|pid:none) Dictyostelium discoideum catalase ...   273   7e-82
CP000949_5083(CP000949|pid:none) Pseudomonas putida W619, comple...   262   6e-80
CP000094_64(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, co...   259   3e-79
CP000076_74(CP000076|pid:none) Pseudomonas fluorescens Pf-5, com...   256   2e-78
CP000075_280(CP000075|pid:none) Pseudomonas syringae pv. syringa...   255   4e-78
CP000284_2371(CP000284|pid:none) Methylobacillus flagellatus KT,...   256   6e-78
CP000712_130(CP000712|pid:none) Pseudomonas putida F1, complete ...   255   6e-78
(Q9I1W8) RecName: Full=Catalase HPII;          EC=1.11.1.6;  &AE...   255   2e-77
protein update 2009. 4. 3
PSORT 

 psg: 0.77  gvh: 0.38  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.02
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CHJ256 is nuc
5' end seq. ID CHJ256F
5' end seq. 
>CHJ256F.Seq
TTGGCCTACTGGATTTATTTTCCTTCATATTATTAATTCTAATCAAATAAAAAATGAATA
AGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAA
CAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTC
CAACTCTTTTGGAAGACTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAA
TTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATA
AGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAG
TTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACG
TTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATA
ATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAA
AGATGGAACCACAGAATGAAATGCCAACTGGGGGGAAGTGCTCATGATACTTTTTATGAT
TTCTGTGGATTAAAACCAGAGAGTGCTCATAGCGTACTATGGGTAATGTCAGATCGTGGT
ATCCCAATTTCACTTCGTCATNNNNNNNNNN
Length of 5' end seq. 691
3' end seq. ID CHJ256Z
3' end seq. 
>CHJ256Z.Seq
NNNNNNNNNNCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTAT
TATCTGGTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATG
ATGACGTTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTNT
CTTCAACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAA
TCATTGGTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAG
CCACTAAAATCCTNTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAAC
ATCTCAAAACCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTAC
CTCAAGATCAGGTTTATTACTTGGTAAGGGTTATAAAGATATCACTGAACAATTCTTTTA
TTCACTTGCTCATCATCGTGTTTGGG
Length of 3' end seq. 506
Connected seq. ID CHJ256P
Connected seq. 
>CHJ256P.Seq
TTGGCCTACTGGATTTATTTTCCTTCATATTATTAATTCTAATCAAATAAAAAATGAATA
AGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAA
CAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTC
CAACTCTTTTGGAAGACTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAA
TTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATA
AGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAG
TTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACG
TTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATA
ATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAA
AGATGGAACCACAGAATGAAATGCCAACTGGGGGGAAGTGCTCATGATACTTTTTATGAT
TTCTGTGGATTAAAACCAGAGAGTGCTCATAGCGTACTATGGGTAATGTCAGATCGTGGT
ATCCCAATTTCACTTCGTCAT----------CAAGAAGATTATGGTAAAACCATCACCAG
CTTTATCTCAACCAAATTTATTATCTGGTGATATCGTTAGTCGTAGAATTTCAGTTATCA
TTGAAAAAGGTGTTGACTATGATGACGTTATCAATTTCAAAGATGATATGGAGAAAAGAG
GTGCAATGGTAATGTTAGTNTCTTCAACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAA
TGTTATCTCCAAAAGGTACAATCATTGGTAACCCTTCCATTTTCTTTGATGCAGTCTATG
TTCCAAAATCAACAGAAGAAGCCACTAAAATCCTNTCTGATGATGGTAATTTCCTTCATT
ACATTCTTGAAGCCTTTAAACATCTCAAAACCATTGCATTTGGTGGTTCTGTATCGGTGA
TTAAAGAATTACTTCGTTTACCTCAAGATCAGGTTTATTACTTGGTAAGGGTTATAAAGA
TATCACTGAACAATTCTTTTATTCACTTGCTCATCATCGTGTTTGGG
Length of connected seq. 1177
Full length Seq ID -
Full length Seq. -
Length of full length seq. -