CHJ253
Library CH
(Link to library)
Clone ID CHJ253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15865-1
Original site URL
Representative seq. ID CHJ253P
(Link to Original site)
Representative DNA sequence
>CHJ253 (CHJ253Q) /CSM/CH/CHJ2-C/CHJ253Q.Seq.d/
ATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCA
AATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAA
AAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAA
ATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCA
ATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTT
ATCCACCAAAGGTACCAGCTCCTGGATCGAATAAATTCATTGGTTTCCTAGCTTTGGGTG
TATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAA
AATTAATTAAACAAAAACATTAAAAAAAAAAXXXXXXXXXXATTCATTATATTATTAATT
TGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAA
GAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAA
GAATGCCAAGAATACTGCATCNTCATATGCNTNTGGAATAAATGCATCAAAAGATCAATT
AAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCNATTTGAATAATGCCAAACA
TACTANTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGC
TCNTGGATCGAATAAATTCAT
sequence update 2002.10.25
Translated Amino Acid sequence
ihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*
mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldrinslvs*lwv
ylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhxhmx
xe*mhqkin*iqiskilkrtfqai*impnilxkkmsimlkepvihqryqlxdrins


Translated Amino Acid sequence (All Frames)
Frame A:
ihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*
mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldrinslvs*lwv
ylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhxhmx
xe*mhqkin*iqiskilkrtfqai*impnilxkkmsimlkepvihqryqlxdrins

Frame B:
fiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnk
cikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswie*ihwfpsfgc
iwficleil*rkeiqre*tkin*tktlkkk---

---fiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeycixicx
wnkcikrsikfkfqky*rehfkxfe*cqtyx*rkcp*csknrlstkgtsswie*ih

Frame C:
slyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyasgin
askdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigflalgv
fglfawkfyegkkykeneqklikqkh*kk---

---slyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyax
ginaskdqlnsnfknikenissxlnnakhtxeenvhnaqrtgyppkvpaxgsnkf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHJ253 (CHJ253Q) /CSM/CH/CHJ2-C/CHJ253Q.Seq.d/ 611 e-174
SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/ 603 e-171
SSM690 (SSM690Q) /CSM/SS/SSM6-D/SSM690Q.Seq.d/ 603 e-171
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/ 603 e-171
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/ 603 e-171
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/ 603 e-171
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/ 603 e-171
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/ 603 e-171
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/ 603 e-171
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/ 603 e-171

own update 2002.11.23
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2. 34 2e-04 11
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 32 0.008 19
AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence. 52 0.015 1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds. 52 0.015 1
AC151709|AC151709.9 Medicago truncatula clone mth2-31g22, WORKING DRAFT SEQUENCE. 36 0.017 9
CW430510|CW430510.1 fsbb001f144e01f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f144e01, genomic survey sequence. 40 0.047 2
AR584244|AR584244.1 Sequence 1 from patent US 6797466. 36 0.047 23
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 36 0.047 23
CX088611|CX088611.1 EHADL40TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence. 38 0.13 2
AC002383|AC002383.1 Homo sapiens BAC clone CTB-67E13 from 7, complete sequence. 38 0.13 2
dna update 2005. 1. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.91
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A... 35 2.0
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f... 35 2.0
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ... 35 2.0
AL844507_56(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 35 2.7

protein update 2009. 4. 3
PSORT

psg: 0.93 gvh: 0.27 alm: 0.30 top: 0.57 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.24 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHJ253 is cyt

5' end seq. ID CHJ253F
5' end seq.
>CHJ253F.Seq
ATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCA
AATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAA
AAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAA
ATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCA
ATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTT
ATCCACCAAAGGTACCAGCTCCTGGATCGAATAAATTCATTGGTTTCCTAGCTTTGGGTG
TATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAA
AATTAATTAAACAAAAACATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 461
3' end seq. ID CHJ253Z
3' end seq.
>CHJ253Z.Seq
NNNNNNNNNNATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATT
ATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAA
CTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCNTCATATGCN
TNTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAAC
ATTTCAAGCNATTTGAATAATGCCAAACATACTANTGAAGAAAATGTCCATAATGCTCAA
AGAACCGGTTATCCACCAAAGGTACCAGCTCNTGGATCGAATAAATTCAT
Length of 3' end seq. 350
Connected seq. ID CHJ253P
Connected seq.
>CHJ253P.Seq
ATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCA
AATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAA
AAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAA
ATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCA
ATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTT
ATCCACCAAAGGTACCAGCTCCTGGATCGAATAAATTCATTGGTTTCCTAGCTTTGGGTG
TATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAA
AATTAATTAAACAAAAACATTAAAAAAAAAA----------ATTCATTATATTATTAATT
TGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAA
GAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAA
GAATGCCAAGAATACTGCATCNTCATATGCNTNTGGAATAAATGCATCAAAAGATCAATT
AAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCNATTTGAATAATGCCAAACA
TACTANTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGC
TCNTGGATCGAATAAATTCAT
Length of connected seq. 791
Full length Seq ID -
Full length Seq. -
Length of full length seq. -