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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ224
Library CH
(Link to library)
Clone ID CHJ224
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHJ224P
(Link to Original site)
Representative DNA sequence 
>CHJ224 (CHJ224Q) /CSM/CH/CHJ2-A/CHJ224Q.Seq.d/
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXXX
CATCTTCACCATCATCATCTGCTGCAAGATNTTCTCCATCTTCATCTGCTGCAAGATCTT
CTCCATCTTCATCTGCTGCAAGATCTTCCCCATCTTCATCTGCATCATCAAGATCTTCCC
CATCTTCATCTGCATCATCAAGNTCTGCCCCATATTCATCTGCATCATCAAGNTCTGCTC
CATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTA
CAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
fnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---HLHHHHLLQDXLHLHLLQDLLHLHLLQDLPHLHLHHQDLPHLHLHHQXLPHIHLHHQ
XLLHLHLHHLHLHHLHLHHLQQLQLQLQLQLQLQLQLQ
Translated Amino Acid sequence (All Frames) 
Frame A:
iqlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk---

---HLHHHHLLQDXLHLHLLQDLLHLHLLQDLPHLHLHHQDLPHLHLHHQXLPHIHLHHQ
XLLHLHLHHLHLHHLHLHHLQQLQLQLQLQLQLQLQLQ

Frame B:
fnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---iftiiicckxfsificckifsificckifpificiikifpificiikxcpificiik
xcsificiificiificiicsnyscnyncnyscnync

Frame C:
stq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk---

---sspsssaarxspsssaarsspsssaarsspsssassrsspsssassxsapyssassx
sapsssassssassssassaattaattiattaattta
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ224 (CHJ224Q) /CSM/CH/CHJ2-A/CHJ224Q.Seq.d/                        167   2e-40
CHJ493 (CHJ493Q) /CSM/CH/CHJ4-D/CHJ493Q.Seq.d/                        161   1e-38
CHJ436 (CHJ436Q) /CSM/CH/CHJ4-B/CHJ436Q.Seq.d/                        155   7e-37
CHQ386 (CHQ386Q) /CSM/CH/CHQ3-D/CHQ386Q.Seq.d/                        149   4e-35
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        143   3e-33
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        143   3e-33
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        143   3e-33
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        143   3e-33
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/                        143   3e-33
SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/                        143   3e-33
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   143   1e-55  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   143   2e-53  5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    54   0.002  1
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54   0.002  1
AZ574185|AZ574185.1 325PvG08 Pv MBN #30 Plasmodium vivax genomic 3', DNA sequence.    38   0.003  2
CR380956|CR380956.1 Candida glabrata strain CBS138 chromosome J complete sequence.    48   0.13   1
AC109831|AC109831.5 Mus musculus BAC clone RP24-104B17 from chromosome 9, complete sequence.    36   0.28   2
CV735434|CV735434.1 Cri2_13_B20_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_13_B20 5', mRNA sequence.    34   0.36   2
CV734780|CV734780.1 Cri2_11_F13_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_11_F13 5', mRNA sequence.    34   0.36   2
CV736041|CV736041.1 Cri2_14_L15_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_14_L15 5', mRNA sequence.    34   0.36   2
dna update 2005. 1. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 79,631,298
protein update 2009. 4. 3
PSORT 

 psg: 0.69  gvh: 0.45  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHJ224 is cyt
5' end seq. ID CHJ224F
5' end seq. 
>CHJ224F.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 180
3' end seq. ID CHJ224Z
3' end seq. 
>CHJ224Z.Seq
NNNNNNNNNNCATCTTCACCATCATCATCTGCTGCAAGATNTTCTCCATCTTCATCTGCT
GCAAGATCTTCTCCATCTTCATCTGCTGCAAGATCTTCCCCATCTTCATCTGCATCATCA
AGATCTTCCCCATCTTCATCTGCATCATCAAGNTCTGCCCCATATTCATCTGCATCATCA
AGNTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCT
GCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAA
Length of 3' end seq. 295
Connected seq. ID CHJ224P
Connected seq. 
>CHJ224P.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----------
CATCTTCACCATCATCATCTGCTGCAAGATNTTCTCCATCTTCATCTGCTGCAAGATCTT
CTCCATCTTCATCTGCTGCAAGATCTTCCCCATCTTCATCTGCATCATCAAGATCTTCCC
CATCTTCATCTGCATCATCAAGNTCTGCCCCATATTCATCTGCATCATCAAGNTCTGCTC
CATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTA
CAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAA
Length of connected seq. 455
Full length Seq ID -
Full length Seq. -
Length of full length seq. -