CHJ171 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHJ171
Library	CH (Link to library)
Clone ID	CHJ171 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16308-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHJ1-C/CHJ171Q.Seq.d/
Representative seq. ID	CHJ171P (Link to Original site)
Representative DNA sequence	>CHJ171 (CHJ171Q) /CSM/CH/CHJ1-C/CHJ171Q.Seq.d/ ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGXXXXXXXXXXATTCAGT TTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATGATAGATCAAGAGG TGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACATAGAAGTTTAACTTATGA AGATGGTAAAGGTTTAGAAATTCNTGCAATTGATGAATCNTCAATTAATGCACGTTTTGA ATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTGGTGGTGGTGGTGA TGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGA TTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATAT TCTATCAATGGAAAGATCTGGTCNTCGTTCAATTAAATTAAGAATTCATAATATTGAAAA TAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTATCTTTTATCAAATCAAT TAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGA TAATATTATTTCTTNTCATCGTTCAATTGTTGGAAAAAATCTTTTCCNTANTAAAGATAC TCCAACTCGTTTCAACCCAA
sequence update	2002.10.25
Translated Amino Acid sequence	lk*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP TLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFKW--- ---SVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLTYEDGKGLEIXAIDESSI NARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQHKFQIYQGQDSSYMSSKSFMLKPLP EFIHILSMERSGXRSIKLRIHNIENNNQSPITFDLNGLLSFIKSIKSIKEYNLSLINRFV DNNIDNIISXHRSIVGKNLFXXKDTPTRFNP
Translated Amino Acid sequence (All Frames)	Frame A: ikikfi**fnffhsiqryneklllfyinfiifsllfikrwntsfnstftlfwm dinnerilygsskyyiingsiikcikstkiclvnwifrtmvgyannkfyktc k*nickwwmgne*smckfrkcntiikwtiyreiwkttrewmansiwtfiidt nitssiwltcciesysliekeirrkeftim--- ---iqfisnlkvlekdlfvimidqevfqvkvkvawkwhyievlmkmvkvkfxqlmnxq lmhvlnvimkyhqihnnrmvvvvvmilennqliininskfikvkilliclqnllcnhy qslfifyqwkdlvxvqlnefiilkiiinlqsllimayyllsnqlnqlkniiylsids liiiliilflxivqllekifsxxkilqlvstq Frame B: lkNSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP TLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFKW--- ---fslyriskywkkicl**ikrcfksrsrllgngitkfnlrwrfrnscn*ixn ctfmlfrstikfttiewwwww*yktinlstipnlsrsrfflyvfkifyvktit rvysysingkiwssfniknsyksisnhffkwliifyqininrififnqir *yyyfxssfncwkksfpxrysnsfqp Frame C: nkihliiiiffsyski*ktfiilyfyyflmkfaihkmvklnfifhihivildg hqqtniiwvklkvlyhqwfnhmlnqihlenlfglkldfnnggmicqlklkmilnml kmielnlmvdgmmkhvqvkvldnyqmdinllernlennqrvdgklihldihhhq hyklnlvinmlyivftmnkrnlkkkriynln--- ---SVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLTYEDGKGLEIXAIDESSI NARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQHKFQIYQGQDSSYMSSKSFMLKPLP EFIHILSMERSGXRSIKLRIHNIENNNQSPITFDLNGLLSFIKSIKSIKEYNLSLINRFV DNNIDNIISXHRSIVGKNLFXXKDTPTRFNP
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHL340 (SHL340Q) /CSM/SH/SHL3-B/SHL340Q.Seq.d/ 1068 0.0 SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 1068 0.0 SHJ609 (SHJ609Q) /CSM/SH/SHJ6-A/SHJ609Q.Seq.d/ 1068 0.0 SHI833 (SHI833Q) /CSM/SH/SHI8-B/SHI833Q.Seq.d/ 1068 0.0 SHI645 (SHI645Q) /CSM/SH/SHI6-B/SHI645Q.Seq.d/ 1068 0.0 SHI325 (SHI325Q) /CSM/SH/SHI3-B/SHI325Q.Seq.d/ 1068 0.0 SHH546 (SHH546Q) /CSM/SH/SHH5-B/SHH546Q.Seq.d/ 1068 0.0 SHG272 (SHG272Q) /CSM/SH/SHG2-C/SHG272Q.Seq.d/ 1068 0.0 SHF162 (SHF162Q) /CSM/SH/SHF1-C/SHF162Q.Seq.d/ 1068 0.0 SHE818 (SHE818Q) /CSM/SH/SHE8-A/SHE818Q.Seq.d/ 1068 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 3e-15 32 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 7e-15 23 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 5e-12 18 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 40 8e-12 21 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 2e-11 16 AL929357\|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 3e-11 21 AE017332\|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome. 34 1e-10 32 CR382400\|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 32 2e-10 23 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 5e-10 16 AE014816\|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence. 38 2e-09 19
dna update	2005. 1. 1
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 147 1e-33 (Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 145 2e-33 BC142656_1(BC142656\|pid:none) Homo sapiens mannosidase, alpha, c... 139 2e-31 AB011474_23(AB011474\|pid:none) Arabidopsis thaliana genomic DNA,... 139 2e-31 (P27046) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 139 3e-31 AC148217_12(AC148217\|pid:none) Medicago truncatula clone mth2-20... 137 6e-31 (P28494) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 137 8e-31 M24353_1(M24353\|pid:none) Rattus norvegicus alpha-mannosidase II... 137 8e-31 AL391146_7(AL391146\|pid:none) Arabidopsis thaliana DNA chromosom... 137 1e-30 AK161799_1(AK161799\|pid:none) Mus musculus 13 days embryo male t... 135 2e-30
protein update	2009. 4. 3
PSORT	psg: 0.94 gvh: 0.66 alm: 0.47 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: extracellular, including cell wall 24.0 %: cytoplasmic 16.0 %: mitochondrial 12.0 %: nuclear 8.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for CHJ171 is exc
5' end seq. ID	CHJ171F
5' end seq.	>CHJ171F.Seq ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGNNNNNNNNNN
Length of 5' end seq.	653
3' end seq. ID	CHJ171Z
3' end seq.	>CHJ171Z.Seq NNNNNNNNNNATTCAGTTTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAAT AATGATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACAT AGAAGTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCNTGCAATTGATGAATCNTCA ATTAATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAAT GGTGGTGGTGGTGGTGATGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAA ATTTATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTA CCAGAGTTTATTCATATTCTATCAATGGAAAGATCTGGTCNTCGTTCAATTAAATTAAGA ATTCATAATATTGAAAATAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTA TCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTC GTTGATAATAATATTGATAATATTATTTCTTNTCATCGTTCAATTGTTGGAAAAAATCTT TTCCNTANTAAAGATACTCCAACTCGTTTCAACCCAA
Length of 3' end seq.	637
Connected seq. ID	CHJ171P
Connected seq.	>CHJ171P.Seq ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGG----------ATTCAGT TTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATGATAGATCAAGAGG TGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACATAGAAGTTTAACTTATGA AGATGGTAAAGGTTTAGAAATTCNTGCAATTGATGAATCNTCAATTAATGCACGTTTTGA ATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTGGTGGTGGTGGTGA TGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGA TTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATAT TCTATCAATGGAAAGATCTGGTCNTCGTTCAATTAAATTAAGAATTCATAATATTGAAAA TAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTATCTTTTATCAAATCAAT TAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGA TAATATTATTTCTTNTCATCGTTCAATTGTTGGAAAAAATCTTTTCCNTANTAAAGATAC TCCAACTCGTTTCAACCCAA
Length of connected seq.	1270
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas