>CHJ155 (CHJ155Q) /CSM/CH/CHJ1-C/CHJ155Q.Seq.d/
AGATNAATTCACTTTTTTTTTTAATATTACCCAAAAATGTTTAGTTTAGGAAAATTGGTT
AAAAAAGATGCTTCTTTTTATAGATATATAACAAATGTTAATAAAGATTTAAAAATTAAA
CCAATTACAAAGATATTAATTGCAAATAGAGGTGAAATTGCATGTCGTGTAATGAGAACA
GCAAAATCAAAAGGTGTAAAAACCGTANCAGTTTATAGTGAAGCAGATAANAATTCATTA
CATGTTTCAATGGCAGATGANAGTTATTTAATTGGACCAGCAGCAGCCAAAGAGAGTTAT
TTATGTGGAAATAANATCATAGATGTANCAAAGAGATCTGGAGCACAAGCAATTCATCCA
GGTTATGGTTTCTTATCANANAATTCANATTTTGCTGATCTCTGTGANANANAAGGTATC
ATTTTCATTGGACCACCATCAGATGCAATCAAAGCAATGGGTAGCAAAAGTGCCTCAAAG
GATATTATGATCAAAGCTGGCGTACCAACCATCCCAGGTTACCACGGTGAANATCAGTCA
ATGAGTGTGTTGAANAGTGAGGCTGCAAAGAXXXXXXXXXX

rxihfff*YYPKMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRT
AKSKGVKTVXVYSEADXNSLHVSMADXSYLIGPAAAKESYLCGNXIIDVXKRSGAQAIHP
GYGFLSXNSXFADLCXXXGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHGEXQS
MSVLXSEAAK---

Frame A:
rxihfff*YYPKMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRT
AKSKGVKTVXVYSEADXNSLHVSMADXSYLIGPAAAKESYLCGNXIIDVXKRSGAQAIHP
GYGFLSXNSXFADLCXXXGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHGEXQS
MSVLXSEAAK---


Frame B:
dxftfffnitqkclv*enwlkkmllfidi*qmliki*klnqlqry*lqievklhvv**eq
qnqkv*kpxqfivkqixihymfqwqmxvi*ldqqqpkrviyveixs*mxqrdlehkqfiq
vmvsyxxixillisvxxkvsfsldhhqmqskqwvakvpqril*sklayqpsqvttvxisq
*vc*xvrlq---


Frame C:
xnslfflilpknv*frkig*krcffl*iynkc**rfkn*tnykdinck*r*ncmscnens
kikrcknrxsl**sr*xfitcfngr*xlfnwtsssqrelfmwk*xhrcxkeiwstsnssr
lwflixxfxfc*sl*xxryhfhwttircnqsng*qkclkgyydqswrtnhprlpr*xsvn
ecvex*gck---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP809 (VHP809Q) /CSM/VH/VHP8-A/VHP809Q.Seq.d/                       1011   0.0
VHB677 (VHB677Q) /CSM/VH/VHB6-D/VHB677Q.Seq.d/                       1011   0.0
SFG531 (SFG531Q) /CSM/SF/SFG5-B/SFG531Q.Seq.d/                       1011   0.0
CHJ155 (CHJ155Q) /CSM/CH/CHJ1-C/CHJ155Q.Seq.d/                       1011   0.0
VHG722 (VHG722Q) /CSM/VH/VHG7-A/VHG722Q.Seq.d/                       1009   0.0
FC-BI24 (FC-BI24Q) /CSM/FC/FC-BI/FC-BI24Q.Seq.d/                      993   0.0
CFC144 (CFC144Q) /CSM/CF/CFC1-B/CFC144Q.Seq.d/                        993   0.0
SFK676 (SFK676Q) /CSM/SF/SFK6-D/SFK676Q.Seq.d/                        977   0.0
VHF430 (VHF430Q) /CSM/VH/VHF4-B/VHF430Q.Seq.d/                        975   0.0
AHL506 (AHL506Q) /CSM/AH/AHL5-A/AHL506Q.Seq.d/                        971   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ735426|AJ735426.1 Gallus gallus EST, clone 13e11s6.              46   5e-07  2
AJ446310|AJ446310.1 Gallus gallus EST, clone library riken1, clone 13e11r1.    46   6e-07  2
AJ720239|AJ720239.1 Gallus gallus mRNA for hypothetical protein, clone 13e11.    46   2e-06  2
CO724876|CO724876.1 ILLUMIGEN_MCQ_24294 Katze_MMJJ Macaca mulatta cDNA clone IBIUW:27442 5' similar to Bases 25 to 905 highly similar to human PCCA (Hs.80741), mRNA sequence.    42   2e-04  3
CO724898|CO724898.1 ILLUMIGEN_MCQ_24489 Katze_MMJJ Macaca mulatta cDNA clone IBIUW:26377 5' similar to Bases 25 to 927 highly similar to human PCCA (Hs.80741), mRNA sequence.    42   2e-04  3
BJ769111|BJ769111.1 Caenorhabditis elegans cDNA clone:yk1690e06 : 5' end.    54   3e-04  2
AE002113|AE002113.1 Ureaplasma parvum serovar 3 str. ATCC 700970 section 14 of 59 of the complete genome.    36   0.006  4
CB141967|CB141967.1 K-EST0195645 L11SNU354s1 Homo sapiens cDNA clone L11SNU354s1-31-C07 5', mRNA sequence.    40   0.009  3
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    52   0.011  1
CN415451|CN415451.1 17000417981612 GRN_ES Homo sapiens cDNA 5', mRNA sequence.    40   0.011  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KE6) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   320   1e-86
AP007255_674(AP007255|pid:none) Magnetospirillum magneticum AMB-...   196   4e-49
BC125958_1(BC125958|pid:none) Danio rerio zgc:154106, mRNA (cDNA...   195   8e-49
BX005105_1(BX005105|pid:none) Zebrafish DNA sequence from clone ...   195   8e-49
CU459003_2063(CU459003|pid:none) Magnetospirillum gryphiswaldens...   194   1e-48
CP000514_2096(CP000514|pid:none) Marinobacter aquaeolei VT8, com...   191   9e-48
AJ720239_1(AJ720239|pid:none) Gallus gallus mRNA for hypothetica...   191   1e-47
BC021382_1(BC021382|pid:none) Mus musculus methylcrotonoyl-Coenz...   191   1e-47
CP000781_1841(CP000781|pid:none) Xanthobacter autotrophicus Py2,...   191   1e-47
AB097824_1(AB097824|pid:none) Pagrus major MCCC1 mRNA for methyl...   191   1e-47

 psg: 0.59  gvh: 0.34  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHJ155 is cyt

>CHJ155F.Seq
AGATNAATTCACTTTTTTTTTTAATATTACCCAAAAATGTTTAGTTTAGGAAAATTGGTT
AAAAAAGATGCTTCTTTTTATAGATATATAACAAATGTTAATAAAGATTTAAAAATTAAA
CCAATTACAAAGATATTAATTGCAAATAGAGGTGAAATTGCATGTCGTGTAATGAGAACA
GCAAAATCAAAAGGTGTAAAAACCGTANCAGTTTATAGTGAAGCAGATAANAATTCATTA
CATGTTTCAATGGCAGATGANAGTTATTTAATTGGACCAGCAGCAGCCAAAGAGAGTTAT
TTATGTGGAAATAANATCATAGATGTANCAAAGAGATCTGGAGCACAAGCAATTCATCCA
GGTTATGGTTTCTTATCANANAATTCANATTTTGCTGATCTCTGTGANANANAAGGTATC
ATTTTCATTGGACCACCATCAGATGCAATCAAAGCAATGGGTAGCAAAAGTGCCTCAAAG
GATATTATGATCAAAGCTGGCGTACCAACCATCCCAGGTTACCACGGTGAANATCAGTCA
ATGAGTGTGTTGAANAGTGAGGCTGCAAAGANNNNNNNNNN