CHJ139 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHJ139
Library	CH (Link to library)
Clone ID	CHJ139 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13024-1\|Contig-U16344-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHJ1-B/CHJ139Q.Seq.d/
Representative seq. ID	CHJ139P (Link to Original site)
Representative DNA sequence	>CHJ139 (CHJ139Q) /CSM/CH/CHJ1-B/CHJ139Q.Seq.d/ ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXX XXXXXXCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTG NTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGNTAACTTCAACATTGTTG GTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAA TCACCACNTCAACCCAAACNTCAATNTCTCAATCATCAACCAAGACTGTCAACGGTAAGA CCACCACTCAATCATCATCAAGCTCATCATCATCTATCTCATAAACAATTCGTTCCAATG ATCGTTTGTTCAGGTACTGCTGATGTTGCATGGTAACNTCAATGTCGTTGCNTCAGAAGC CAATCAAGCTAAAATTGCNTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAA AGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAAGC TGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAAGTTTG GTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTC AANTCNTCCTCTCCAAGGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTA TTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTT TAAAACAATAAAAATTTACAT
sequence update	2002.10.25
Translated Amino Acid sequence	iqstnkkqqfkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpyii ttnpiplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---IESKVIDFTHGTIQGVGXLKCGTCNFANKIAXNFNIVGNVKMAATATVYANIDALMS ITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSIStirsndrlfrycccmvtsmslxqk piklklxlvlysnssqpqllkvmspqlavsxqalllllnklpvlllllpkkllwllxikf gqlihhvtvnvdrdykliqxxlskdnklkynsflfffiltnvfvnlinflntpfsi lkq*kft
Translated Amino Acid sequence (All Frames)	Frame A: iqstnkkqqfkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpyii ttnpiplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---qlnqkllislmvpfkvlvxlnvvlvtlpirslxtstllvtlkwpqlqlsmqtlmlc qspxqpkxqxlnhqprlstvrpplnhhqahhhlshkqfvpmivcsgtadvawxqcrcxr sqssncxwyciqihlspscrcllslshxkhccccstscrccccccpkscygccxs lvnckftmlmwieeiinfxsssprtinnntthsyfslfpmylsinlltfthpfq fnnknlh Frame B: fnqqtknnnlkkqfivkkqlknhlffspphykfqyfflnfpaflffytittnpisl lptlyhynliyiiiicciilvyicfniyqvtnkkk--- ---niksyfhswyhsrcwxsmwyllcqdrxlqhcwrngrncnclckhcfnv nhhxnpnxnxsiinqdcqrdhhsiiikliiiylinnsfqsfvqvllmlhgnxnvvase anqakiasgtvfkfisapvvkgnvssvscltsstaaaaqqaagaaaaaaqkaamaaaykv wsivnspcncecglkrlidsxxplqgqikiiqliliflysnqcicqltylfkhtlfn fktikiy Frame C: sinkqkttiknnnl*sknnritncffllltinsniffinfqlfcfftqsqptlyhy yqpytitilfikllfvvlfcifvdlifiskqtkkk--- ---IESKVIDFTHGTIQGVGXLKCGTCNFANKIAXNFNIVGNVKMAATATVYANIDALMS ITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSIStirsndrlfrycccmvtsmslxqk piklklxlvlysnssqpqllkvmspqlavsxqalllllnklpvlllllpkkllwllxikf gqlihhvtvnvdrdykliqxxlskdnklkynsflfffiltnvfvnlinflntpfsi lkq*kft
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHJ139 (CHJ139Q) /CSM/CH/CHJ1-B/CHJ139Q.Seq.d/ 841 0.0 SHF894 (SHF894Q) /CSM/SH/SHF8-D/SHF894Q.Seq.d/ 805 0.0 SHF794 (SHF794Q) /CSM/SH/SHF7-D/SHF794Q.Seq.d/ 805 0.0 SHF819 (SHF819Q) /CSM/SH/SHF8-A/SHF819Q.Seq.d/ 801 0.0 SHF737 (SHF737Q) /CSM/SH/SHF7-B/SHF737Q.Seq.d/ 795 0.0 SHF410 (SHF410Q) /CSM/SH/SHF4-A/SHF410Q.Seq.d/ 795 0.0 SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 793 0.0 SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 793 0.0 SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 793 0.0 SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/ 793 0.0
own update	2005. 1. 1
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U83087\|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 498 0.0 4 BD460245\|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.005 5 BD452167\|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.005 5 AX344185\|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.005 5 AX251781\|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.005 5 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.060 13 AY171066\|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 34 0.068 7 AJ297856\|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.076 1 AL663022\|AL663022.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14. 38 0.15 5 AC148223\|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.30 1
dna update	2005. 1. 1
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U83087_1(U83087\|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 115 8e-51
protein update	2008.11. 1
PSORT	psg: 0.62 gvh: 0.38 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 24.0 %: nuclear 20.0 %: mitochondrial 8.0 %: vesicles of secretory system 4.0 %: cytoskeletal >> prediction for CHJ139 is cyt
5' end seq. ID	CHJ139F
5' end seq.	>CHJ139F.Seq ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNN NNNNNN
Length of 5' end seq.	306
3' end seq. ID	CHJ139Z
3' end seq.	>CHJ139Z.Seq NNNNNNNNNNCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTT GGTGNTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGNTAACTTCAACATT GTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATG TCAATCACCACNTCAACCCAAACNTCAATNTCTCAATCATCAACCAAGACTGTCAACGGT AAGACCACCACTCAATCATCATCAAGCTCATCATCATCTATCTCATAAACAATTCGTTCC AATGATCGTTTGTTCAGGTACTGCTGATGTTGCATGGTAACNTCAATGTCGTTGCNTCAG AAGCCAATCAAGCTAAAATTGCNTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTG TTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAAC AAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAAG TTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTG ATTCAANTCNTCCTCTCCAAGGACAATAAATTAAAATAATACAACTCATTCTTATTTTTC TTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCA ATTTTAAAACAATAAAAATTTACAT
Length of 3' end seq.	745
Connected seq. ID	CHJ139P
Connected seq.	>CHJ139P.Seq ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA---- ------CAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTG NTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGNTAACTTCAACATTGTTG GTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAA TCACCACNTCAACCCAAACNTCAATNTCTCAATCATCAACCAAGACTGTCAACGGTAAGA CCACCACTCAATCATCATCAAGCTCATCATCATCTATCTCATAAACAATTCGTTCCAATG ATCGTTTGTTCAGGTACTGCTGATGTTGCATGGTAACNTCAATGTCGTTGCNTCAGAAGC CAATCAAGCTAAAATTGCNTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAA AGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAAGC TGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAAGTTTG GTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTC AANTCNTCCTCTCCAAGGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTA TTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTT TAAAACAATAAAAATTTACAT
Length of connected seq.	1031
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas