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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHJ125
Library CH
(Link to library)
Clone ID CHJ125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHJ125P
(Link to Original site)
Representative DNA sequence 
>CHJ125 (CHJ125Q) /CSM/CH/CHJ1-B/CHJ125Q.Seq.d/
ATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATAATAATAAAAATAAT
AAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATAGCAAAATAACTAAT
ATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAAAATGA
AAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAA
AACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCAC
TACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGAT
CACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAA
CTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAA
CTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATCTGAAG
TAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTG
ATAGTATGAGTAATTCTGGTAATTTCCXXXXXXXXXXGAATATCCATACTATCAACTTGG
TCAATTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCAAATCCGT
TAGTAAACTTTTTAGAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAAGC
AATCATTTCAATGATGAATGGTACAATCGATACATNTCAATATGATNTTTTGAGATTGAA
TTTTTTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGANTTTAGTGA
AGTTGCAAANTNTTTNTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAA
TTTACCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGT
TGAACTTTTAATTCCTTTCTNTGATNTTCAAGTTTATCCAAATGNTTTTATCAGTAGTAT
CNCTTTCCAAANTCAAGTACAAGATCNCCAAGGTGTTTTNTTTATTGGTGATANTTNTGC
TGGTAATTTTGTACCNCCATATAAAGTANTANAGGANGGTTCNAACGCTTTCNAATTATT
ATCAAATATTTATTTATTANTATTAATTTTTATAATTTCTTTATTATTTATCTAAACAAA
AAAAAAACAAATAAATAAAAAACATATATATTTGTATTATTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
yq**fnffqkk******k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi***IKMK
EYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTTTTTGS
PASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEV
TSSSSESSAGEHPCATDVFDSMSNSGNF---

---EYPYYQLGQLLNGASDQYNTGNVNFKSVSKLFRGFPTIEYQLYNNYKAIISMMNGTI
DTXQYDXLRLNFXFLHDQXYNNPNPSIXFSEVAXXXFLDXQICITVQVVGNLPCVGLSPY
LGGQVPNAVWVELLIPFXDXQVYPNXFISSIXFQXQVQDXQGVXFIGDXXAGNFVPPYKV
XXXGSNAFXLLSNIYLLXLIFIISLLFI*tkkkqinkkhiylyyff
Translated Amino Acid sequence (All Frames) 
Frame A:
iinnnliffkknnnnnnknnkknky**ilfknfiyskitnil*nnfrifkkysynnk*k*
knikklyyivf*ff*fyvlqnhlfqmtl*qlqqqqqqqlhyqrhrqhqqqr*qqqpqlqd
hqhqpqlqehqhqlqehqhqlqehhhhhlhrmkqlqlqhqlknl*hqhhhqhhhhhhhlk
*hhphpnhqlvnihvqlmfliv*vilvis---

---EYPYYQLGQLLNGASDQYNTGNVNFKSVSKLFRGFPTIEYQLYNNYKAIISMMNGTI
DTXQYDXLRLNFXFLHDQXYNNPNPSIXFSEVAXXXFLDXQICITVQVVGNLPCVGLSPY
LGGQVPNAVWVELLIPFXDXQVYPNXFISSIXFQXQVQDXQGVXFIGDXXAGNFVPPYKV
XXXGSNAFXLLSNIYLLXLIFIISLLFI*tkkkqinkkhiylyyff

Frame B:
lsiii*ffskkiiiiiikiikkininkyylkilfiak*liyckiileylknihiiinkne
ri*knyii*ffsffnfmfcktisfr*pfnnfnnnnnsncttndigsinskgnnnnhnyri
tsinhnyrstninyrsininyrstiiiifie*nnsncntn*ktcntntiiniiiiiii*s
niiliriisw*tsmcn*cf**ye*fw*f---

---nihtinlvny*mvlpisitlvm*isnplvnflevfqlssinytiitkqsfq**mvqs
ihxnmxf*d*ifxsfminxiiiqiqvlxlvklqxxxf*xfkfvlpfkwlviylvlvyxht
wvvkfqmqyglnf*flsxxfkfiqmxlsvvslskxkykixkvfxllvixxlvilyxhikx
xrxvxtlsnyyqifiyxy*fl*flyylskqkknk*ikniyiciif

Frame C:
yq**fnffqkk******k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi***IKMK
EYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTTTTTGS
PASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEV
TSSSSESSAGEHPCATDVFDSMSNSGNF---

---isilstwsiikwcfrsv*hw*ckfqir**tf*rfsnyrvsiiq*lqsnhfndewynr
yxsi*xfeieffxps*sxl**sksky*x**sckxfxfrxsnlyyrssgw*ftlcwfixil
gwssskcsmg*tfnsfl*xsslskxfyq*yxfpxsstrsprcfxyw*xxcw*fctxi*sx
xgxfxrfxiiikylfixinfynffiiylnkkktnk*ktyifvlff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ125 (CHJ125Q) /CSM/CH/CHJ1-B/CHJ125Q.Seq.d/                        938   0.0
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/                        841   0.0
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/                        839   0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        833   0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                        833   0.0
CHR237 (CHR237Q) /CSM/CH/CHR2-B/CHR237Q.Seq.d/                        829   0.0
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                        827   0.0
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                        827   0.0
AHM471 (AHM471Q) /CSM/AH/AHM4-C/AHM471Q.Seq.d/                        827   0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/                        821   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   1e-05  8
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    36   2e-04  9
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    44   3e-04  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   4e-04  12
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   7e-04  7
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   0.002  10
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   0.003  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.006  10
AC023719|AC023719.4 Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    40   0.006  7
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.006  1
dna update 2004.12.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 957,587,298
protein update 2009. 4. 3
PSORT 

 psg: 1.00  gvh: 0.82  alm: 0.23  top: 0.20  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHJ125 is pla
5' end seq. ID CHJ125F
5' end seq. 
>CHJ125F.Seq
ATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATAATAATAAAAATAAT
AAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATAGCAAAATAACTAAT
ATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAAAATGA
AAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAA
AACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCAC
TACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGAT
CACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAA
CTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAA
CTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATCTGAAG
TAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTG
ATAGTATGAGTAATTCTGGTAATTTCCNNNNNNNNNN
Length of 5' end seq. 637
3' end seq. ID CHJ125Z
3' end seq. 
>CHJ125Z.Seq
NNNNNNNNNNGAATATCCATACTATCAACTTGGTCAATTATTAAATGGTGCTTCCGATCA
GTATAACACTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTAGAGGTTTTCCAAC
TATCGAGTATCAATTATACAATAATTACAAAGCAATCATTTCAATGATGAATGGTACAAT
CGATACATNTCAATATGATNTTTTGAGATTGAATTTTTTNTTCCTTCATGATCAATNTTA
TAATAATCCAAATCCAAGTATTGANTTTAGTGAAGTTGCAAANTNTTTNTTTTTAGATNT
TCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATA
CTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTNTGATNT
TCAAGTTTATCCAAATGNTTTTATCAGTAGTATCNCTTTCCAAANTCAAGTACAAGATCN
CCAAGGTGTTTTNTTTATTGGTGATANTTNTGCTGGTAATTTTGTACCNCCATATAAAGT
ANTANAGGANGGTTCNAACGCTTTCNAATTATTATCAAATATTTATTTATTANTATTAAT
TTTTATAATTTCTTTATTATTTATCTAAACAAAAAAAAAACAAATAAATAAAAAACATAT
ATATTTGTATTATTTTTTT
Length of 3' end seq. 679
Connected seq. ID CHJ125P
Connected seq. 
>CHJ125P.Seq
ATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATAATAATAAAAATAAT
AAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATAGCAAAATAACTAAT
ATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAAAATGA
AAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAA
AACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCAC
TACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGAT
CACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAA
CTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAA
CTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATCTGAAG
TAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTG
ATAGTATGAGTAATTCTGGTAATTTCC----------GAATATCCATACTATCAACTTGG
TCAATTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCAAATCCGT
TAGTAAACTTTTTAGAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAAGC
AATCATTTCAATGATGAATGGTACAATCGATACATNTCAATATGATNTTTTGAGATTGAA
TTTTTTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGANTTTAGTGA
AGTTGCAAANTNTTTNTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAA
TTTACCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGT
TGAACTTTTAATTCCTTTCTNTGATNTTCAAGTTTATCCAAATGNTTTTATCAGTAGTAT
CNCTTTCCAAANTCAAGTACAAGATCNCCAAGGTGTTTTNTTTATTGGTGATANTTNTGC
TGGTAATTTTGTACCNCCATATAAAGTANTANAGGANGGTTCNAACGCTTTCNAATTATT
ATCAAATATTTATTTATTANTATTAATTTTTATAATTTCTTTATTATTTATCTAAACAAA
AAAAAAACAAATAAATAAAAAACATATATATTTGTATTATTTTTTT
Length of connected seq. 1296
Full length Seq ID -
Full length Seq. -
Length of full length seq. -