>CHJ108 (CHJ108Q) /CSM/CH/CHJ1-A/CHJ108Q.Seq.d/
ATTATTCAATTTTATTTTTAATCATTCAAATTAAAAAAAAACAATAACTAACTAAGTTAA
AAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATAT
TCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTC
ATAAATCTTCGGAATGTATTGTTATAGATTATACACCATGTTGTGGTGAACAAAAATGGG
CTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCAT
CCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAA
TTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCCTATTAG
GTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTG
AATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGGTG
GTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACAT
CAGGTAGTTCATCAAGTGGTAGTTCATXXXXXXXXXX

ysilfliiqikkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVIDYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSSGG
TSGGSSSGGTSGGSSSGGTSGSSSSGSS---

Frame A:
iiqfyf*sfklkknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkknv
inlrnvll*iihhvvvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllk
lqlqpsilvlmprlknvpy*vnhvvskrtlvqiqlpvaqvnqfvkv*alvvqhlvvvhqv
vhqvvvhqvvhqvvvhqvvhqvvhqvvv---


Frame B:
lfnfifnhsn*kktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rrms
*ifgmycyrlytmlw*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cqd*rmcpir*im*fpkellfksnfllpr*inl*rfklw*fniwwwfirw
yirw*firwyirw*firwyir*fikw*f---


Frame C:
ysilfliiqikkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVIDYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSSGG
TSGGSSSGGTSGGSSSGGTSGSSSSGSS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ108 (CHJ108Q) /CSM/CH/CHJ1-A/CHJ108Q.Seq.d/                        888   0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        872   0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        872   0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        872   0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        872   0.0
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/                        872   0.0
SFH201 (SFH201Q) /CSM/SF/SFH2-A/SFH201Q.Seq.d/                        872   0.0
SFH185 (SFH185Q) /CSM/SF/SFH1-D/SFH185Q.Seq.d/                        872   0.0
SFG663 (SFG663Q) /CSM/SF/SFG6-C/SFG663Q.Seq.d/                        872   0.0
SFG607 (SFG607Q) /CSM/SF/SFG6-A/SFG607Q.Seq.d/                        872   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   668   0.0    5
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   668   0.0    6
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    62   3e-06  14
AC145220|AC145220.10 Medicago truncatula clone mth2-24j17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   0.002  2
AC130807|AC130807.30 Medicago truncatula clone mth2-13o20, complete sequence.    38   0.006  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.007  8
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    32   0.014  18
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    32   0.020  10
BD460387|BD460387.1 Diagnosis of Diseases Associated with Cell Cycle.    32   0.022  5
BD452309|BD452309.1 Diagnosis of Diseases Associated with Cell Cycle.    32   0.022  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   234   2e-60
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   104   2e-21
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        52   1e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    49   1e-04
AE016879_1757(AE016879|pid:none) Bacillus anthracis str. Ames, c...    40   0.041
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    37   0.34
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat...    35   2.2
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ...    35   2.2
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    35   2.2
(P14586) Histidine-rich protein.  &A29653(A29653) &M17028_2(M170...    34   2.9

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.20  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear

>> prediction for CHJ108 is exc

>CHJ108F.Seq
ATTATTCAATTTTATTTTTAATCATTCAAATTAAAAAAAAACAATAACTAACTAAGTTAA
AAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATAT
TCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTC
ATAAATCTTCGGAATGTATTGTTATAGATTATACACCATGTTGTGGTGAACAAAAATGGG
CTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCAT
CCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAA
TTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCCTATTAG
GTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTG
AATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGGTG
GTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACAT
CAGGTAGTTCATCAAGTGGTAGTTCATNNNNNNNNNN