AFG293
Library AF
(Link to library)
Clone ID AFG293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFG293P
(Link to Original site)
Representative DNA sequence
>AFG293 (AFG293Q) /CSM/AF/AFG2-D/AFG293Q.Seq.d/
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGXXXX
XXXXXXTCGCTGATGATTGGNAATAACTTCCATCAAANCAAATCAAAGATCCAAAACAAT
CCAATACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCA
GCCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGAT
TGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAA
GGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCA
TTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGT
GCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTC
ACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAA
GCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCT
GACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAA
GAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGAGACAANAAAGAAGAAGTCAAAA
AATCAACCAAAAAAGT
sequence update 2001. 6. 2
Translated Amino Acid sequence
fsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVSD
WHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKN
EQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIK--
-

---SLMIGNNFHQXKSKIQNNPIPVDWVDVKEIDDPEDVKPAGHDDIPASIVDPEAVKPE
DWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDL
GAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKKMFDDLEAAKAEERKK
ADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTETXKKKSKNQPKK


Translated Amino Acid sequence (All Frames)
Frame A:
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*s--
-

---SLMIGNNFHQXKSKIQNNPIPVDWVDVKEIDDPEDVKPAGHDDIPASIVDPEAVKPE
DWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDL
GAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKKMFDDLEAAKAEERKK
ADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTETXKKKSKNQPKK

Frame B:
flqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**
la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke
*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnq--
-

---r**lxitsikxnqrsktiqyqsiglt*rksmtqkmlnqpvmtisqlqsliqklsnqr
igmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*litqntlktmnstslmis
vlsvsnygklnlvpslti*ssptlskklkislkrpllptkkpkrkclttskppklkrerk
ltkn*lpkkllkkkpkklmkkkkkslkki*lklrqxrrsqkinqks

Frame C:
fsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVSD
WHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKN
EQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIK--
-

---addwx*lpsxqikdpkqsntsrlg*rkgnr*prrc*tsrs*rypsfnr*srscqtrg
le*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin**prir*rq*tlpl**sr
cyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlccqprsrkenv*rprsrqs*rekes
*rkiscrksc*krsrrs**rrrrsr*rrfs*n*dxkeevkkstkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFG293 (AFG293Q) /CSM/AF/AFG2-D/AFG293Q.Seq.d/ 1798 0.0
VFM129 (VFM129Q) /CSM/VF/VFM1-B/VFM129Q.Seq.d/ 975 0.0
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/ 975 0.0
VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/ 975 0.0
VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/ 975 0.0
VFG242 (VFG242Q) /CSM/VF/VFG2-B/VFG242Q.Seq.d/ 975 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 975 0.0
VFE122 (VFE122Q) /CSM/VF/VFE1-A/VFE122Q.Seq.d/ 975 0.0
SFK591 (SFK591Q) /CSM/SF/SFK5-D/SFK591Q.Seq.d/ 975 0.0
SFJ301 (SFJ301Q) /CSM/SF/SFJ3-A/SFJ301Q.Seq.d/ 975 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 894 0.0 6
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 2e-22 2
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 7e-21 4
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 9e-11 1
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 2e-10 2
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 74 5e-09 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 74 5e-09 1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence. 74 5e-09 1
AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence. 74 5e-09 1
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence. 74 5e-09 1
dna update 2004. 5. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 307 e-158
EF084103_1(EF084103|pid:none) Picea sitchensis clone WS0274_F04 ... 183 2e-86
(Q9STD3) RecName: Full=Calreticulin; Flags: Precursor; &AJ00076... 170 5e-83
BT072764_1(BT072764|pid:none) Salmo salar clone ssal-rgf-539-230... 170 5e-79
BC057469_1(BC057469|pid:none) Danio rerio calreticulin, like 2, ... 164 2e-77
AY393845_1(AY393845|pid:none) Gallus gallus calreticulin mRNA, p... 159 3e-77
D78589_1(D78589|pid:none) Rana rugosa mRNA for calreticulin, com... 159 6e-77
(Q2HWU3) RecName: Full=Calreticulin; Flags: Precursor; &(Q4R6K8... 167 6e-77
AK223060_1(AK223060|pid:none) Homo sapiens mRNA for calreticulin... 167 6e-77
(P15253) RecName: Full=Calreticulin; AltName: Full=CRP55; AltNam... 164 2e-75
protein update 2009. 4.20
PSORT

psg: 1.01 gvh: 0.69 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
16.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: vacuolar
8.0 %: nuclear
8.0 %: endoplasmic reticulum

>> prediction for AFG293 is exc

5' end seq. ID AFG293F
5' end seq.
>AFG293F.Seq
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAG----
------
Length of 5' end seq. 536
3' end seq. ID AFG293Z
3' end seq.
>AFG293Z.Seq
----------TCGCTGATGATTGGNAATAACTTCCATCAAANCAAATCAAAGATCCAAAA
CAATCCAATACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAA
ACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGA
GGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATA
CAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACA
CCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCT
CGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGAT
CGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCA
AGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAA
AGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGA
AGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGAGACAANAAAGAAGAAGTC
AAAAAATCAACCAAAAAAGT
Length of 3' end seq. 670
Connected seq. ID AFG293P
Connected seq.
>AFG293P.Seq
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAG----
------TCGCTGATGATTGGNAATAACTTCCATCAAANCAAATCAAAGATCCAAAACAAT
CCAATACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCA
GCCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGAT
TGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAA
GGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCA
TTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGT
GCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTC
ACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAA
GCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCT
GACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAA
GAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGAGACAANAAAGAAGAAGTCAAAA
AATCAACCAAAAAAGT
Length of connected seq. 1206
Full length Seq ID -
Full length Seq. -
Length of full length seq. -