>CHI816 (CHI816Q) /CSM/CH/CHI8-A/CHI816Q.Seq.d/
TTGGCCTACTGGAAAATAAAACAAAATAAAATAAAACAAAACAAAACAAAACAAAACAAA
ACAAACAAAATAAAATAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA
CAAAACAAAATAAAATAACATGAATAACAACCAAAATATGAATAGAAACTACAATAACAA
TCAAAATAATAGTAATAATAATACTAATAATAACGGCAATAGTAACCAAAATAATATGGG
TATGAATATGAATATGAATATGAATATGAATATGAATATGAACAATAATAACAATATGAA
TGGAATGGGTGGAGGTAATAACATGATGATGAATAATGGGATGAATAATTTTAATAATTC
ATCAAACTCTTTTATGTATAATAACAATAATACTAATATGAATGGCATGAATAATATGAA
TATGAATAATTTCAATGGTTATAATAATAATAATAATAATAATAATAATTATAACGGATC
TAATAACATGAATGGTGGAAATAATAATAATAATAATAATAATATGAATAACCATAATAA
TAATAATATTAATAATAATAATAACTATAATAATAACAATAATAACAATAATAACAAAAA
AGTTATACTCCCAAAAAATTTTACAAACCACGATGGCCCAATTCTXXXXXXXXXX

wptgk*nkik*nktkqnktkqtk*nktkqnktkqnktkqnktk*NNMNNNQNMNRNYNNN
QNNSNNNTNNNGNSNQNNMGMNMNMNMNMNMNMNNNNNMNGMGGGNNMMMNNGMNNFNNS
SNSFMYNNNNTNMNGMNNMNMNNFNGYNNNNNNNNNYNGSNNMNGGNNNNNNNNMNNHNN
NNINNNNNYNNNNNNNNNKKVILPKNFTNHDGPI---

Frame A:
laywkikqnkikqnktkqnktnkik*nktkqnktkqnktkqnkik*he*qpkye*klq*q
sk*****y***rq**pk*ygyeyeyeyeyeyeyeq**qyewngwr**hdde*wde*f**f
iklfyv**q*y*yewhe*yeye*fqwl*********l*ri**hewwk*******ye*p**
**y*****l***q**q**qksytpkkfykprwpn---


Frame B:
wptgk*nkik*nktkqnktkqtk*nktkqnktkqnktkqnktk*NNMNNNQNMNRNYNNN
QNNSNNNTNNNGNSNQNNMGMNMNMNMNMNMNMNNNNNMNGMGGGNNMMMNNGMNNFNNS
SNSFMYNNNNTNMNGMNNMNMNNFNGYNNNNNNNNNYNGSNNMNGGNNNNNNNNMNNHNN
NNINNNNNYNNNNNNNNNKKVILPKNFTNHDGPI---


Frame C:
gllenktk*nktkqnktkqnkqnkikqnktkqnktkqnktkqnkit*ittki*iettiti
kiiviiiliitaivtkiiwv*i*i*i*i*i*i*tiiti*mewvevit***img*iiliih
qtllciitiili*ma*ii*i*iismviiiiiiiiiiitdlit*mveiiiiiiii*itiii
iiliiiitiiitiitiitkklysqkilqttmaqf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI816 (CHI816Q) /CSM/CH/CHI8-A/CHI816Q.Seq.d/                        155   1e-36
SLK613 (SLK613Q) /CSM/SL/SLK6-A/SLK613Q.Seq.d/                         40   0.041
CFJ759 (CFJ759Q) /CSM/CF/CFJ7-C/CFJ759Q.Seq.d/                         40   0.041
CFF180 (CFF180Q) /CSM/CF/CFF1-D/CFF180Q.Seq.d/                         40   0.041
VHI366 (VHI366Q) /CSM/VH/VHI3-C/VHI366Q.Seq.d/                         38   0.16
SHK167 (SHK167Q) /CSM/SH/SHK1-C/SHK167Q.Seq.d/                         38   0.16
AHM727 (AHM727Q) /CSM/AH/AHM7-B/AHM727Q.Seq.d/                         38   0.16
AFH675 (AFH675Q) /CSM/AF/AFH6-D/AFH675Q.Seq.d/                         38   0.16
VSB348 (VSB348Q) /CSM/VS/VSB3-B/VSB348Q.Seq.d/                         34   2.6
SSK665 (SSK665Q) /CSM/SS/SSK6-C/SSK665Q.Seq.d/                         34   2.6

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC103643|AC103643.1 Mus musculus clone RP24-267K18, LOW-PASS SEQUENCE SAMPLING.    38   0.48   2
BU498492|BU498492.1 PfESToab97h06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    46   0.74   1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           46   0.74   1
BU494897|BU494897.1 PfESToab69b12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    46   0.74   1
BD080275|BD080275.1 Transgenic plant with altered morphology and endo-1,4-beta-glucanase gene, promoter and protein isolated from Arabidopsis thaliana.    42   2.6    2
AR262069|AR262069.1 Sequence 9 from patent US 6323023.             42   2.6    2
AR096206|AR096206.1 Sequence 9 from patent US 6005092.             42   2.6    2
X98543|X98543.1 A.thaliana endo-1,4-beta-glucanase gene.           42   2.6    2
AY463097|AY463097.1 Plasmodium falciparum histone acetyltransferase (HAT) mRNA, complete cds.    36   2.8    3
AC002074|AC002074.2 Homo sapiens BAC clone GS1-56H18 from 7, complete sequence.    44   2.9    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 196,043,163

 psg: 0.75  gvh: -0.04  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHI816 is nuc

>CHI816F.Seq
TTGGCCTACTGGAAAATAAAACAAAATAAAATAAAACAAAACAAAACAAAACAAAACAAA
ACAAACAAAATAAAATAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA
CAAAACAAAATAAAATAACATGAATAACAACCAAAATATGAATAGAAACTACAATAACAA
TCAAAATAATAGTAATAATAATACTAATAATAACGGCAATAGTAACCAAAATAATATGGG
TATGAATATGAATATGAATATGAATATGAATATGAATATGAACAATAATAACAATATGAA
TGGAATGGGTGGAGGTAATAACATGATGATGAATAATGGGATGAATAATTTTAATAATTC
ATCAAACTCTTTTATGTATAATAACAATAATACTAATATGAATGGCATGAATAATATGAA
TATGAATAATTTCAATGGTTATAATAATAATAATAATAATAATAATAATTATAACGGATC
TAATAACATGAATGGTGGAAATAATAATAATAATAATAATAATATGAATAACCATAATAA
TAATAATATTAATAATAATAATAACTATAATAATAACAATAATAACAATAATAACAAAAA
AGTTATACTCCCAAAAAATTTTACAAACCACGATGGCCCAATTCTNNNNNNNNNN