CHI773 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHI773
Library	CH (Link to library)
Clone ID	CHI773 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11930-1\|Contig-U16527-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHI7-D/CHI773Q.Seq.d/
Representative seq. ID	CHI773P (Link to Original site)
Representative DNA sequence	>CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/ TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT GGAGGGCGAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAA GTTGTTGCAGTTAAAAAGCTCGTAGTXXXXXXXXXXAAATTGGAATAACATATATTTTAG GCTATGGTCATCCCAATATCCCATATTCTGCTTGTGGTGTACCTGCGGTTTTCATAAAAC CAGTAATACTATCACCTGTAGATGGTAAAGAATTAAGTGAAAATGAAATTGGTGAAATTT CATTTAAATTACCAATGCCACCAAGTTTTGCAACTACATTTTATAAAAAAGATGAAAAAT TTAAACAATTGTTTAGCAAATATAAAGGTTATTATAATTCTGGTGATTTAGGATTTAAAG ATAATAATGGATATTTTAGTGTAATTTCAAGAATAGAAGATCAATTAACTTTAAATGATG GAAAATCAATTATATTAAATAAAATTGAAAGTTCAATTTTAAAACATCCATTAGTTTTAG AATGTTGTTCATTTGCTCTTGAAAATTTAAATCAATTAGTTGCATTATTGGTTTTAAAAA ATGCTGATGATCATCATCATATTGATATGAATCATCTAAAAAATGAAATTAATTTAATAA TTTCAAATGATTTTAATCCATCTACTTCTTTAAGTAAAATTATAATTATTCCTGAATTAC CAATATCAATTAATGGGAAAATTATAAGATCTGTCATATCAAAATTTATAAATAATTCAA ATTATCAATTACCTGAAAATATTGGTGATTTGAAATTATTTTATAACATCAAGAATTTAT GTAAACAATAATAATATCTTAATAAAATAATTTAATTAAAAATAAAAAAATAAAATTAAA GTAACC
sequence update	2002.10.25
Translated Amino Acid sequence	lvdpasshmlvskikpcmskykflydetadgslqqtnrlsgftfwitavnrgyiqa mgdwqrklsdyhstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgng elgfdsgegaemattstegsrranysipirgssdnkyqylsflegnNEHKLKLLINTI GGRVWCQQPAVIPAPIAYTKVVAVKKLV--- ---IGITYILGYGHPNIPYSACGVPAVFIKPVILSPVDGKELSENEIGEISFKLPMPPSF ATTFYKKDEKFKQLFSKYKGYYNSGDLGFKDNNGYFSVISRIEDQLTLNDGKSIILNKIE SSILKHPLVLECCSFALENLNQLVALLVLKNADDHHHIDMNHLKNEINLIISNDFNPSTS LSKIIIIPELPISINGKIIRSVISKFINNSNYQLPENIGDLKLFYNIKNLCKQylnki ilkikknsn
Translated Amino Acid sequence (All Frames)	Frame A: lvdpasshmlvskikpcmskykflydetadgslqqtnrlsgftfwitavnrgyiqa mgdwqrklsdyhstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgng elgfdsgegaemattstegsrranysipirgssdnkyqylsflegnNEHKLKLLINTI GGRVWCQQPAVIPAPIAYTKVVAVKKLV--- ---klehifamvipishillvvylrfsnqyyhlmvknvkmklvkfhlnyqchqv lqlhfikkmknlnnclanikviiilvidlkiimdilvfqekinlmmenqlyikl kvqfnihfnvvhlllkiinlhywfkmlmiiiiliiikmklifqmilihll lvkllflnyqyqlmgkldlsyqnliiqiinylkilvinyfitsriyvnnnnilik fnkknkikvt Frame B: nwlilpvviclsqrlshaclsinsctmklqtahynsdklidfrvlpfgpqigantykr wvtgngssaiisilpmpsgfgyriilqiedlsstsllchcpinfrwygiglpwlrvtg ngsiperepekwlpllrkaagaqitqsqygevvtinintypfwraiemntnnsltql egesgassprfqlqhilkllqlkss--- ---nwnniyfrlwssqypifclwctcgfhktsntitcrwrikknwnfiitnatkf cnyilkrkitivqirllfwfrir*wifcnfknrrsinfkwkinyikn* kfnfktsisfrmlficskfksisciigfkkcsssyyesskknfnnfkfsiyf fknynysitninwenykichikiykfklsitkywfeiilhqefmtiiis*n nliknkkiklk Frame C: tgscqsyaclkdamhvvilvrncrrlittvin*tfgfylldnrsksglihtsd glateaqrllafyqclrvlgdteycrsriylrqvycvtalstfdgtvlayhgcngrg irvrfrrgslrngyhfygrqqarkllnpntgk*qisipilfggqlktqiktlnhnw raslvpaargnsssnsiysccskars--- ---IGITYILGYGHPNIPYSACGVPAVFIKPVILSPVDGKELSENEIGEISFKLPMPPSF ATTFYKKDEKFKQLFSKYKGYYNSGDLGFKDNNGYFSVISRIEDQLTLNDGKSIILNKIE SSILKHPLVLECCSFALENLNQLVALLVLKNADDHHHIDMNHLKNEINLIISNDFNPSTS LSKIIIIPELPISINGKIIRSVISKFINNSNYQLPENIGDLKLFYNIKNLCKQ*ylnki ilkikknsn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/ 2559 0.0 CHQ774 (CHQ774Q) /CSM/CH/CHQ7-D/CHQ774Q.Seq.d/ 1332 0.0 SFJ381 (SFJ381Q) /CSM/SF/SFJ3-D/SFJ381Q.Seq.d/ 1259 0.0 CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/ 1233 0.0 CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/ 1233 0.0 SFE240 (SFE240Q) /CSM/SF/SFE2-B/SFE240Q.Seq.d/ 1193 0.0 CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/ 1178 0.0 SFK216 (SFK216Q) /CSM/SF/SFK2-A/SFK216Q.Seq.d/ 1172 0.0 VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/ 1168 0.0 VHG238 (VHG238Q) /CSM/VH/VHG2-B/VHG238Q.Seq.d/ 1166 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY171066\|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1114 0.0 10 K02641\|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence. 1106 0.0 2 X00134\|X00134.1 Dictyostelium discoideum 17S rRNA sequence. 1100 0.0 2 X00601\|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 567 0.0 4 AC136838\|AC136838.28 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 10 unordered pieces. 232 e-151 7 AY148964\|AY148964.1 Acanthamoeba sp. KA/E18 18S ribosomal RNA gene, complete sequence. 262 e-135 3 AF236103\|AF236103.1 Penicillium commune 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 248 e-131 3 AY173011\|AY173011.1 Acanthamoeba sp. KA/MSG27 18S ribosomal RNA gene, complete sequence. 262 e-129 4 U07402\|U07402.1 Acanthamoeba polyphaga CDC:0884:V029 18S rRNA gene. 262 e-129 4 U07415\|U07415.1 Acanthamoeba polyphaga JAC/S2 ATCC 50372 18S rRNA gene. 262 e-129 4
dna update	2004.12.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116984_182(AC116984\|pid:none) Dictyostelium discoideum chromos... 233 1e-59 AC116984_181(AC116984\|pid:none) Dictyostelium discoideum chromos... 226 1e-57 AC116984_173(AC116984\|pid:none) Dictyostelium discoideum chromos... 218 5e-55 AC116984_175(AC116984\|pid:none) Dictyostelium discoideum chromos... 216 1e-54 AC116984_172(AC116984\|pid:none) Dictyostelium discoideum chromos... 196 2e-48 AC116984_174(AC116984\|pid:none) Dictyostelium discoideum chromos... 195 3e-48 AC116984_184(AC116984\|pid:none) Dictyostelium discoideum chromos... 195 4e-48 AC116984_180(AC116984\|pid:none) Dictyostelium discoideum chromos... 129 2e-28 CP001339_1490(CP001339\|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 91 7e-17 CP000753_2805(CP000753\|pid:none) Shewanella baltica OS185, compl... 87 1e-15
protein update	2009. 4. 2
PSORT	psg: 0.86 gvh: 0.50 alm: 0.34 top: 0.43 tms: 0.00 mit: 0.16 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 24.0 %: nuclear 8.0 %: mitochondrial 8.0 %: peroxisomal 4.0 %: endoplasmic reticulum >> prediction for CHI773 is cyt
5' end seq. ID	CHI773F
5' end seq.	>CHI773F.Seq TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT GGAGGGCGAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAA GTTGTTGCAGTTAAAAAGCTCGTAGTNNNNNNNNNN
Length of 5' end seq.	636
3' end seq. ID	CHI773Z
3' end seq.	>CHI773Z.Seq NNNNNNNNNNAAATTGGAATAACATATATTTTAGGCTATGGTCATCCCAATATCCCATAT TCTGCTTGTGGTGTACCTGCGGTTTTCATAAAACCAGTAATACTATCACCTGTAGATGGT AAAGAATTAAGTGAAAATGAAATTGGTGAAATTTCATTTAAATTACCAATGCCACCAAGT TTTGCAACTACATTTTATAAAAAAGATGAAAAATTTAAACAATTGTTTAGCAAATATAAA GGTTATTATAATTCTGGTGATTTAGGATTTAAAGATAATAATGGATATTTTAGTGTAATT TCAAGAATAGAAGATCAATTAACTTTAAATGATGGAAAATCAATTATATTAAATAAAATT GAAAGTTCAATTTTAAAACATCCATTAGTTTTAGAATGTTGTTCATTTGCTCTTGAAAAT TTAAATCAATTAGTTGCATTATTGGTTTTAAAAAATGCTGATGATCATCATCATATTGAT ATGAATCATCTAAAAAATGAAATTAATTTAATAATTTCAAATGATTTTAATCCATCTACT TCTTTAAGTAAAATTATAATTATTCCTGAATTACCAATATCAATTAATGGGAAAATTATA AGATCTGTCATATCAAAATTTATAAATAATTCAAATTATCAATTACCTGAAAATATTGGT GATTTGAAATTATTTTATAACATCAAGAATTTATGTAAACAATAATAATATCTTAATAAA ATAATTTAATTAAAAATAAAAAAATAAAATTAAAGTAACC
Length of 3' end seq.	760
Connected seq. ID	CHI773P
Connected seq.	>CHI773P.Seq TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT GGAGGGCGAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAA GTTGTTGCAGTTAAAAAGCTCGTAGT----------AAATTGGAATAACATATATTTTAG GCTATGGTCATCCCAATATCCCATATTCTGCTTGTGGTGTACCTGCGGTTTTCATAAAAC CAGTAATACTATCACCTGTAGATGGTAAAGAATTAAGTGAAAATGAAATTGGTGAAATTT CATTTAAATTACCAATGCCACCAAGTTTTGCAACTACATTTTATAAAAAAGATGAAAAAT TTAAACAATTGTTTAGCAAATATAAAGGTTATTATAATTCTGGTGATTTAGGATTTAAAG ATAATAATGGATATTTTAGTGTAATTTCAAGAATAGAAGATCAATTAACTTTAAATGATG GAAAATCAATTATATTAAATAAAATTGAAAGTTCAATTTTAAAACATCCATTAGTTTTAG AATGTTGTTCATTTGCTCTTGAAAATTTAAATCAATTAGTTGCATTATTGGTTTTAAAAA ATGCTGATGATCATCATCATATTGATATGAATCATCTAAAAAATGAAATTAATTTAATAA TTTCAAATGATTTTAATCCATCTACTTCTTTAAGTAAAATTATAATTATTCCTGAATTAC CAATATCAATTAATGGGAAAATTATAAGATCTGTCATATCAAAATTTATAAATAATTCAA ATTATCAATTACCTGAAAATATTGGTGATTTGAAATTATTTTATAACATCAAGAATTTAT GTAAACAATAATAATATCTTAATAAAATAATTTAATTAAAAATAAAAAAATAAAATTAAA GTAACC
Length of connected seq.	1376
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas