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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI740
Library CH
(Link to library)
Clone ID CHI740
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI740 (CHI740Q) /CSM/CH/CHI7-B/CHI740Q.Seq.d/
XXXXXXXXXXCCNCCAAAACCACCAGTTTGGTTTTTAAGATGNCCACCAAATCATGAATG
TAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATT
AAGATGTCCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGNGTCA
GATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAAT
GTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTG
ATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCNCCAG
GCCATGAATGTAAAGTTGATCCACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCNC
CACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCANTNTGGTG
AAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATG
AATGTAAAGTTGATCAACATGGAAAAGAATGNTGCGTTGTTGCCCATAGACCACCACCGA
AATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAAT
GCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAAACTGTGAAAGAAAA
GGTTTACANTGTGCCATGAAAACTGTACCANTTGATAAAG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---xqnhqfgf*dxhqimnvdlmtkvinav*rftmidvh*DVPHGHECKVDHNGKECXVR
SHRPPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCV
RSERPHPPQHEKCNKRCPPGHECKVDPHGKECCVVAHRPPPKCSLRCPPRHECRVNXXGE
ECCVKVHHDKCSLRCPPGHECKVDQHGKEXCVVAHRPPPKCSLRCPPKHECRINHFGEEC
CVKSRNDCLTCEDLKL*kkrftxchenctx**
Translated Amino Acid sequence (All Frames) 
Frame A:
---xqnhqfgf*dxhqimnvdlmtkvinav*rftmidvh*DVPHGHECKVDHNGKECXVR
SHRPPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCV
RSERPHPPQHEKCNKRCPPGHECKVDPHGKECCVVAHRPPPKCSLRCPPRHECRVNXXGE
ECCVKVHHDKCSLRCPPGHECKVDQHGKEXCVVAHRPPPKCSLRCPPKHECRINHFGEEC
CVKSRNDCLTCEDLKL*kkrftxchenctx**


Frame B:
---xkttslvfkmxtks*m*i**prssmlckgsp**mfikmshmamnvklitmvknvxsd
pidhhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvs
vqkdhthhnmknvirdaxqamnvklihmeknvallpidxhqnal*dvhqdmnvestxxvk
nvvlkfttinvh*dvhqamnvklinmeknxallpidhhrnah*dvhqnmnvesitlvkna
vlkvemiv*lvkt*ncerkglxcamktvpxdk


Frame C:
---pkppvwflrxppnhecrfndqghqccvkvhhdrcslrcptwp*m*s*sqw*rmlxqi
p*ttttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcp
frkttpttt*km**empxrp*m*s*stwkrmlrccp*txtkmlfkmstkt*m*sqpxw*r
mlc*sspr*mfiemstrp*m*s*stwkrmxrccp*tttemlikmstkt*m*nqslw*rml
c*k*k*lfnl*rpktvkekvyxvp*klyxlik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI740 (CHI740Q) /CSM/CH/CHI7-B/CHI740Q.Seq.d/                       1546   0.0
CHI869 (CHI869Q) /CSM/CH/CHI8-C/CHI869Q.Seq.d/                       1465   0.0
AHN244 (AHN244Q) /CSM/AH/AHN2-B/AHN244Q.Seq.d/                       1463   0.0
AHA296 (AHA296Q) /CSM/AH/AHA2-D/AHA296Q.Seq.d/                       1463   0.0
CFF368 (CFF368Q) /CSM/CF/CFF3-C/CFF368Q.Seq.d/                       1459   0.0
AHD377 (AHD377Q) /CSM/AH/AHD3-D/AHD377Q.Seq.d/                       1459   0.0
AHA358 (AHA358Q) /CSM/AH/AHA3-C/AHA358Q.Seq.d/                       1459   0.0
CHM150 (CHM150Q) /CSM/CH/CHM1-C/CHM150Q.Seq.d/                       1455   0.0
AHD250 (AHD250Q) /CSM/AH/AHD2-C/AHD250Q.Seq.d/                       1455   0.0
CHL448 (CHL448Q) /CSM/CH/CHL4-B/CHL448Q.Seq.d/                       1453   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1213   0.0    5
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1213   0.0    5
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    60   3e-12  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    60   9e-12  4
AC124167|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   0.001  5
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.14   3
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.18   4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    42   0.41   3
AB021506|AB021506.1 Human herpesvirus 6 DNA, variant B, complete genome, strain:HST.    44   0.46   7
AF157706|AF157706.1 Human herpesvirus 6B strain Z29, complete genome.    44   0.47   7
dna update 2004.12.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   495   e-164
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   188   7e-47
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   112   4e-24
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    79   2e-13
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        70   8e-13
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    67   9e-10
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    63   1e-08
AK128809_1(AK128809|pid:none) Homo sapiens cDNA FLJ45978 fis, cl...    59   1e-07
BC131709_1(BC131709|pid:none) Homo sapiens cysteine-rich PAK1 in...    56   2e-06
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    55   3e-06
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.23  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHI740 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI740Z
3' end seq. 
>CHI740Z.Seq
NNNNNNNNNNCCNCCAAAACCACCAGTTTGGTTTTTAAGATGNCCACCAAATCATGAATG
TAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATT
AAGATGTCCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGNGTCA
GATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAAT
GTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTG
ATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCNCCAG
GCCATGAATGTAAAGTTGATCCACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCNC
CACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCANTNTGGTG
AAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATG
AATGTAAAGTTGATCAACATGGAAAAGAATGNTGCGTTGTTGCCCATAGACCACCACCGA
AATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAAT
GCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAAACTGTGAAAGAAAA
GGTTTACANTGTGCCATGAAAACTGTACCANTTGATAAAG
Length of 3' end seq. 820
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -