CHI663
Library CH
(Link to library)
Clone ID CHI663
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11277-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHI663 (CHI663Q) /CSM/CH/CHI6-C/CHI663Q.Seq.d/
XXXXXXXXXXAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAA
CAGAAGATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGA
AGTGGTTAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAAC
CTGGTGAAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAG
TTTTATCAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAAC
AAGTCAATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTA
AAGAATTGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAG
GAAAGAAAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGA
TCCTTCAAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAG
ATATGTTTAAAGCACTTTATAATGTACCATCATTTACAATTCGTGTTTGTGGTGATCTTG
AAGAATCAACAAAAGCAATAGGTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---SQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQP
GENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAK
ELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKTDED
MFKALYNVPSFTIRVCGDLEESTKAIG


Translated Amino Acid sequence (All Frames)
Frame A:
---SQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQP
GENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAK
ELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKTDED
MFKALYNVPSFTIRVCGDLEESTKAIG


Frame B:
---vkqchqsn*lmf*vn*qkieemkft*sveeivrhwrsg*viyqlvclvnmafsqdnl
vkinhglkvqmqkfngktqfyq*ckilkiehqvq*qklnksishgiiemliqtlvnsklk
n*lhnfvqsqinthwifyqerkqlklnq*vsikvk**k*sfkrlmqisyfvlvmiklmki
clkhfimyhhlqfvfvvilknqqkq*v


Frame C:
---ssnaikain*cfk*tnrr*kk*slrnqwkrsfvigevvrsftnwyvl*twrfhkttw
*kstmd*kskcrssmerhsfinnarf*r*ntrfndrn*tsqyhmal*kc*srlwsips*r
idcttsfsrk*ipigyfirkesn*s*tnryq*r*nskndpskd*crfhtlyw***n**ry
v*stl*ctiiynsclw*s*rinksnr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI663 (CHI663Q) /CSM/CH/CHI6-C/CHI663Q.Seq.d/ 1217 0.0
AHH609 (AHH609Q) /CSM/AH/AHH6-A/AHH609Q.Seq.d/ 1178 0.0
AHI533 (AHI533Q) /CSM/AH/AHI5-B/AHI533Q.Seq.d/ 1168 0.0
CHP648 (CHP648Q) /CSM/CH/CHP6-B/CHP648Q.Seq.d/ 1160 0.0
AHC884 (AHC884Q) /CSM/AH/AHC8-D/AHC884Q.Seq.d/ 1156 0.0
CHM666 (CHM666Q) /CSM/CH/CHM6-C/CHM666Q.Seq.d/ 1154 0.0
CHG693 (CHG693Q) /CSM/CH/CHG6-D/CHG693Q.Seq.d/ 1148 0.0
AHL422 (AHL422Q) /CSM/AH/AHL4-A/AHL422Q.Seq.d/ 1144 0.0
AHB860 (AHB860Q) /CSM/AH/AHB8-C/AHB860Q.Seq.d/ 1138 0.0
CHN189 (CHN189Q) /CSM/CH/CHN1-D/CHN189Q.Seq.d/ 1136 0.0

own update 2002. 9.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF609616|CF609616.1 INFIO01_000425 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 42 0.001 3
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 36 0.002 28
AC145741|AC145741.1 Mus musculus chromosome UNK clone RP24-226K1, *** SEQUENCING IN PROGRESS ***, 52 unordered pieces. 34 0.003 10
CO364472|CO364472.1 RTK1_15_H07.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_15_H07_A029 5', mRNA sequence. 38 0.003 3
BX571857|BX571857.1 Staphylococcus aureus strain MSSA476, complete genome. 34 0.006 23
BA000033|BA000033.2 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2. 34 0.015 22
BA000018|BA000018.3 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome. 34 0.017 23
BA000017|BA000017.4 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome. 34 0.024 23
AF208030|AF208030.1 Zygosaccharomyces rouxii trehalose-6-phosphate phosphatase (TPS2) mRNA, complete cds. 36 0.025 3
AC109656|AC109656.5 Rattus norvegicus clone CH230-240N3, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 38 0.040 9
dna update 2004.12. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NU9) RecName: Full=Alpha,alpha-trehalose-phosphate synthase ... 413 e-114
EU399552_1(EU399552|pid:none) Cryptococcus gattii isolate R265TP... 172 5e-42
AE017342_262(AE017342|pid:none) Cryptococcus neoformans var. neo... 171 2e-41
CR382130_585(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 171 2e-41
DQ407640_1(DQ407640|pid:none) Acanthamoeba castellanii trehalose... 164 2e-39
CP000504_1318(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 163 3e-39
CP000592_242(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 163 3e-39
CR382139_531(CR382139|pid:none) Debaryomyces hansenii strain CBS... 162 5e-39
CP000500_340(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 161 1e-38
D89225_1(D89225|pid:none) Schizosaccharomyces pombe mRNA, partia... 159 6e-38
protein update 2009. 5.19
PSORT

psg: 0.59 gvh: 0.44 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHI663 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI663Z
3' end seq.
>CHI663Z.Seq
NNNNNNNNNNAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAA
CAGAAGATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGA
AGTGGTTAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAAC
CTGGTGAAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAG
TTTTATCAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAAC
AAGTCAATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTA
AAGAATTGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAG
GAAAGAAAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGA
TCCTTCAAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAG
ATATGTTTAAAGCACTTTATAATGTACCATCATTTACAATTCGTGTTTGTGGTGATCTTG
AAGAATCAACAAAAGCAATAGGTG
Length of 3' end seq. 624
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -