CHI642
Library CH
(Link to library)
Clone ID CHI642
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14351-1
Original site URL
Representative seq. ID CHI642E
(Link to Original site)
Representative DNA sequence
>CHI642 (CHI642Q) /CSM/CH/CHI6-B/CHI642Q.Seq.d/
GGAGTTGGGCCGCTCTTATCATAATAATTATGGACACAAATGATTCTATCATTACCTTGA
CATCTTAGGTATATTAAAATAATCAATCTGATAAGTTGCTAATTACCCTCTCTTATAGTG
TTAATTAAATAAAAAAAAAAAGATGTCAAGTGCTCAAGAAATTGTTGATAAAGTAGACCA
ACTTCACCTCGAACGTGAGTTTGTAAAGATTTCAGAATTATTAACTGAAGGTCACAAACA
ATATCCAGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATACTTTGACAAGAATGA
AGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCTTTAGAACTTACCAA
CAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTTTAAT
TTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAATGCATTCAAAATCAA
AGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACCACATTACATTTATT
AGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGAACTGCCGCCAGCGC
TTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACTTACTTTTTAGAAGC
ATACAAATGTGACCCAACCAACATTCGTAACGCCCTCTTCACTGGTGACACCTATGCTGC
CCTTAAAGATAATGCCAAAGCTAAAGAGTTTTACAAAATTGCT
sequence update 2002.10.27
Translated Amino Acid sequence
elgrsyhnnyghk*fyhyldilgilk*si**vanypll*c*LNKKKKMSSAQEIVDKVDQ
LHLEREFVKISELLTEGHKQYPEDVEIMWRLARSYFDKNEEVANKDEKKKLIEQALELTN
KASTINPNHWAVHKWLAILISALGDHISSKEKIANAFKIKDHAVKANELKPNDATTLHLL
GRWCFSISSIGWIERTAASALFGTPPTSTYDEALTYFLEAYKCDPTNIRNALFTGDTYAA
LKDNAKAKEFYKIA


Translated Amino Acid sequence (All Frames)
Frame A:
gvgplls**lwtqmilslp*hlryikiinlisc*lpslivlik*kkkdvkcsrnc**srp
tsprt*vckdfriin*rsqtisrrcrdnvetcqiil*qe*rsr**r*kekth*tsfrtyq
qslny*pkslgcs*mvsnfnfsfr*syfikrkdckciqnqrscsqsk*iktk*cnhitfi
rslvflnflnwld*kncrqrfvwnptninl**sfdllfrsiqm*pnqhs*rplhw*hlcc
p*r*cqs*rvlqnc


Frame B:
elgrsyhnnyghk*fyhyldilgilk*si**vanypll*c*LNKKKKMSSAQEIVDKVDQ
LHLEREFVKISELLTEGHKQYPEDVEIMWRLARSYFDKNEEVANKDEKKKLIEQALELTN
KASTINPNHWAVHKWLAILISALGDHISSKEKIANAFKIKDHAVKANELKPNDATTLHLL
GRWCFSISSIGWIERTAASALFGTPPTSTYDEALTYFLEAYKCDPTNIRNALFTGDTYAA
LKDNAKAKEFYKIA


Frame C:
swaaliiiimdtndsiitlts*vy*nnqsdkllitlsysvn*ikkkrcqvlkkllik*tn
ftsnvsl*rfqny*lkvtnniqkmsr*cgdlpdhtltrmkkslikmkrknslnkl*nlpt
kpqlltqiiglfing*qf*fql*viifhqkkrlqmhskskimqskqmn*nqmmqphyiy*
vvgvsqfpqlvglkelppalclephqhqlmmkl*ltf*khtnvtqptfvtpsslvtpmlp
lkimpklksftkl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI642 (CHI642Q) /CSM/CH/CHI6-B/CHI642Q.Seq.d/ 1447 0.0
VSJ842 (VSJ842Q) /CSM/VS/VSJ8-B/VSJ842Q.Seq.d/ 1233 0.0
VSE877 (VSE877Q) /CSM/VS/VSE8-D/VSE877Q.Seq.d/ 1199 0.0
VSD623 (VSD623Q) /CSM/VS/VSD6-A/VSD623Q.Seq.d/ 914 0.0
VSF318 (VSF318Q) /CSM/VS/VSF3-A/VSF318Q.Seq.d/ 40 0.048
VSF317 (VSF317Q) /CSM/VS/VSF3-A/VSF317Q.Seq.d/ 40 0.048
SSK103 (SSK103Q) /CSM/SS/SSK1-A/SSK103Q.Seq.d/ 40 0.048
SSH786 (SSH786Q) /CSM/SS/SSH7-D/SSH786Q.Seq.d/ 40 0.048
SLH773 (SLH773Q) /CSM/SL/SLH7-D/SLH773Q.Seq.d/ 40 0.048
SLC595 (SLC595Q) /CSM/SL/SLC5-D/SLC595Q.Seq.d/ 40 0.048

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115613|AC115613.3 Dictyostelium discoideum chromosome 2 map 209116-215573 strain AX4, complete sequence. 226 4e-55 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 218 1e-52 1
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 42 3e-05 21
AC098462|AC098462.5 Rattus norvegicus clone CH230-2F20, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces. 36 0.005 7
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 34 0.006 17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.007 23
AC122375|AC122375.4 Mus musculus BAC clone RP23-469G18 from chromosome 16, complete sequence. 34 0.009 8
AX926711|AX926711.1 Sequence 1 from Patent WO03084989. 36 0.017 12
AC145087|AC145087.8 Mus musculus chromosome 1 clone RP23-255P18 map 1, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces. 40 0.025 7
AC135204|AC135204.3 Rattus norvegicus 1 BAC CH230-381D2 (Children's Hospital Oakland Research Institute) complete sequence. 36 0.060 5
dna update 2004.12. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC054253_1(BC054253|pid:none) Xenopus laevis microtubule-associa... 164 4e-39
BC088015_1(BC088015|pid:none) Xenopus tropicalis hypothetical LO... 161 2e-38
AY028171_5(AY028171|pid:none) Leishmania donovani extra chromoso... 159 7e-38
CT005258_151(CT005258|pid:none) Leishmania major strain Friedlin... 157 4e-37
(Q4G069) RecName: Full=Regulator of microtubule dynamics protein... 154 3e-36
AF151848_1(AF151848|pid:none) Homo sapiens CGI-90 protein mRNA, ... 153 5e-36
(Q96DB5) RecName: Full=Regulator of microtubule dynamics protein... 153 5e-36
(Q5R8E4) RecName: Full=Regulator of microtubule dynamics protein... 153 5e-36
(Q32KL4) RecName: Full=Regulator of microtubule dynamics protein... 153 6e-36
AK002442_1(AK002442|pid:none) Mus musculus adult male kidney cDN... 147 4e-34
protein update 2009. 4.12
PSORT

psg: 0.75 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CHI642 is cyt

5' end seq. ID CHI642F
5' end seq.
>CHI642F.Seq
GGAGTTGGGCCGCTCTTATCATAATAATTATGGACACAAATGATTCTATCATTACCTTGA
CATCTTAGGTATATTAAAATAATCAATCTGATAAGTTGCTAATTACCCTCTCTTATAGTG
TTAATTAAATAAAAAAAAAAAGATGTCAAGNGCTCAAGAAATTGTTGATAAAGTANACCA
ACTTCACCTCGAACGTGAGTTTGTAAAGATTTCANAATTATTAACTGAAGGTCACAAACA
ATATCCANAANATGTCGAGATAATGNGGANACTTGCCANATCATACTTTGACAAGAATGA
ANAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCTTTANAACTTACCAA
CAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTTTAAT
TTCAGCTTTAGGNGATCATATTTCATCAAAANAAAANATTGCAAATGCATTCAAAATCAA
AGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACCACATTACATTTATT
AGNNNNNNNNNN
Length of 5' end seq. 552
3' end seq. ID CHI642Z
3' end seq.
>CHI642Z.Seq
NNNNNNNNNNTGTTAATTAAATAAAAAAAAAAAGATGTCAAGTGCTCAAGAAATTGTTGA
TAAAGTAGACCAACTTCACCTCGAACGTGAGTTTGTAAAGATTTCAGAATTATTAACTGA
AGGTCACAAACAATATCCAGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATACTT
TGACAAGAATGAAGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCTTT
AGAACTTACCAACAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGGTT
AGCAATTTTAATTTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAATGC
ATTCAAAATCAAAGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACCAC
ATTACATTTATTAGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGAAC
TGCCGCCAGCGCTTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACTTA
CTTTTTAGAAGCATACAAATGTGACCCAACCAACATTCGTAACGCCCTCTTCACTGGTGA
CACCTATGCTGCCCTTAAAGATAATGCCAAAGCTAAAGAGTTTTACAAAATTGCT
Length of 3' end seq. 655
Connected seq. ID CHI642P
Connected seq.
>CHI642P.Seq
GGAGTTGGGCCGCTCTTATCATAATAATTATGGACACAAATGATTCTATCATTACCTTGA
CATCTTAGGTATATTAAAATAATCAATCTGATAAGTTGCTAATTACCCTCTCTTATAGTG
TTAATTAAATAAAAAAAAAAAGATGTCAAGNGCTCAAGAAATTGTTGATAAAGTANACCA
ACTTCACCTCGAACGTGAGTTTGTAAAGATTTCANAATTATTAACTGAAGGTCACAAACA
ATATCCANAANATGTCGAGATAATGNGGANACTTGCCANATCATACTTTGACAAGAATGA
ANAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCTTTANAACTTACCAA
CAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTTTAAT
TTCAGCTTTAGGNGATCATATTTCATCAAAANAAAANATTGCAAATGCATTCAAAATCAA
AGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACCACATTACATTTATT
AG----------TGTTAATTAAATAAAAAAAAAAAGATGTCAAGTGCTCAAGAAATTGTT
GATAAAGTAGACCAACTTCACCTCGAACGTGAGTTTGTAAAGATTTCAGAATTATTAACT
GAAGGTCACAAACAATATCCAGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATAC
TTTGACAAGAATGAAGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCT
TTAGAACTTACCAACAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGG
TTAGCAATTTTAATTTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAAT
GCATTCAAAATCAAAGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACC
ACATTACATTTATTAGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGA
ACTGCCGCCAGCGCTTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACT
TACTTTTTAGAAGCATACAAATGTGACCCAACCAACATTCGTAACGCCCTCTTCACTGGT
GACACCTATGCTGCCCTTAAAGATAATGCCAAAGCTAAAGAGTTTTACAAAATTGCT
Length of connected seq. 1187
Full length Seq ID CHI642E
Full length Seq.
>CHI642E.Seq
GGAGTTGGGCCGCTCTTATCATAATAATTATGGACACAAATGATTCTATCATTACCTTGA
CATCTTAGGTATATTAAAATAATCAATCTGATAAGTTGCTAATTACCCTCTCTTATAGTG
TTAATTAAATAAAAAAAAAAAGATGTCAAGTGCTCAAGAAATTGTTGATAAAGTAGACCA
ACTTCACCTCGAACGTGAGTTTGTAAAGATTTCAGAATTATTAACTGAAGGTCACAAACA
ATATCCAGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATACTTTGACAAGAATGA
AGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGAACAAGCTTTAGAACTTACCAA
CAAAGCCTCAACTATTAACCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTTTAAT
TTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAATGCATTCAAAATCAA
AGATCATGCAGTCAAAGCAAATGAATTAAAACCAAATGATGCAACCACATTACATTTATT
AGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGAACTGCCGCCAGCGC
TTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACTTACTTTTTAGAAGC
ATACAAATGTGACCCAACCAACATTCGTAACGCCCTCTTCACTGGTGACACCTATGCTGC
CCTTAAAGATAATGCCAAAGCTAAAGAGTTTTACAAAATTGCT
Length of full length seq. 763