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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI614
Library CH
(Link to library)
Clone ID CHI614
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CHI614P
(Link to Original site)
Representative DNA sequence 
>CHI614 (CHI614Q) /CSM/CH/CHI6-A/CHI614Q.Seq.d/
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
NGGGAATTATNTACAAAACTTTCAAACANATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTANCAATAATTAATNGGGTATATAATTNATTTTCTGGGCATTC
TTCTGAACATACCAAAAACNAGTTAAAGGNGGCGTCCAAAACTTCAAAAAAAANAAXXXX
XXXXXXTGATAATCATACATTCCTTAGGGAGAATCGTGATCCAGTCAAGAAAATGAAACA
TCTCCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTGG
AACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTAT
ATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTTG
CAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGTCTAA
ATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTC
AAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACG
TTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCAA
TCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCA
AAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAAC
ACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTA
GATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATAT
TTTATTATCAGGTTTTAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
ifkkkrk*kkk*YFISHYKXGNYXQNFQTXSSALILGLLINLIILVXIINXVYNXFSGHS
SEHTKNXLKXASKTSKKX---

---DNHTFLRENRDPVKKMKHLPQGIL*sksirerffigfgtwhwwctsfsqss*ti*lc
isitllvatyss*yv*tlvlcrn*sfmrtqisiikhwsrsksystmskrw*nya*ystsn
skksw**lgwffrysfg*s*rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclh
qkhlwwstnfnqnhpl*fl*trfrw*wcr*lfrcwlly*w*infclamvcsnrketllsn
illsgfr
Translated Amino Acid sequence (All Frames) 
Frame A:
nf*kkkkikkkiify*sl*nxelxtklsnx*fspnirfid*pnntcxnn*xgi*xifwaf
f*tyqkxvkggvqnfkkx---

---**syip*ges*ssqenetspsrntlvqinqrevfhwlwnmalvvhvfltiivnnitm
yinhspcgniffmiclnfgtlqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvk
lkkklvmiglvlplfiwviitfqtlwfssintlksles*vqsf*plnifqrspiqi*llt
sktplvvhkl*pkssfvislntlsmvvvpitfsmlalvlmvd*lllgngllksqrnliiq
yfiirf*

Frame B:
ifkkkrk*kkk*YFISHYKXGNYXQNFQTXSSALILGLLINLIILVXIINXVYNXFSGHS
SEHTKNXLKXASKTSKKX---

---DNHTFLRENRDPVKKMKHLPQGIL*sksirerffigfgtwhwwctsfsqss*ti*lc
isitllvatyss*yv*tlvlcrn*sfmrtqisiikhwsrsksystmskrw*nya*ystsn
skksw**lgwffrysfg*s*rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclh
qkhlwwstnfnqnhpl*fl*trfrw*wcr*lfrcwlly*w*infclamvcsnrketllsn
illsgfr

Frame C:
flkkkenkkknnillviikxgixyktfkxivqp*y*vy*lt**ylxq*lxgyiixflgil
lnipkts*rxrpklqkkx---

---iiihslgriviqsrk*nislkeyfspnqsergfslalehgiggarlshnhrkqynyv
yqslslwqhilhdmfklwyfaeidllcghryqlsntgqglnriqqcpnvgkimhsilrqt
qkkvgddwvgssvihlgdhnvpnslvfidkytqisrilspivltieyipkitdpnlvayi
kntfggpqtltkiilcdffkhafdgsgadnffdagscidgrltsawqwsaqiakkpyypi
fyyqvl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL782 (CHL782Q) /CSM/CH/CHL7-D/CHL782Q.Seq.d/                       1405   0.0
CHI614 (CHI614Q) /CSM/CH/CHI6-A/CHI614Q.Seq.d/                       1405   0.0
VHD241 (VHD241Q) /CSM/VH/VHD2-B/VHD241Q.Seq.d/                       1392   0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/                       1390   0.0
VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/                       1390   0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/                       1390   0.0
CHQ507 (CHQ507Q) /CSM/CH/CHQ5-A/CHQ507Q.Seq.d/                       1390   0.0
CHI645 (CHI645Q) /CSM/CH/CHI6-B/CHI645Q.Seq.d/                       1390   0.0
CHM612 (CHM612Q) /CSM/CH/CHM6-A/CHM612Q.Seq.d/                       1388   0.0
VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/                       1384   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC025686|AC025686.2 Homo sapiens chromosome 12 clone RP11-681J20 map 12, WORKING DRAFT SEQUENCE, 19 unordered pieces.    38   0.044  7
AC096542|AC096542.2 Homo sapiens chromosome 1 clone RP11-332L18, complete sequence.    48   0.28   1
AC021798|AC021798.5 Homo sapiens clone RP11-25K3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48   0.28   1
AC099065|AC099065.2 Homo sapiens chromosome 1 clone RP11-105I12, complete sequence.    48   0.28   1
AC079310|AC079310.20 Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.53   5
CR382125|CR382125.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL  Y-1140 of Kluyveromyces lactis.    46   1.1    1
AC125652|AC125652.4 Rattus norvegicus clone CH230-227C21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    34   2.0    2
AC130532|AC130532.3 Mus musculus chromosome 7 clone RP23-189G24, complete sequence.    42   2.1    4
BP185852|BP185852.1 Dugesia japonica cDNA, clone: 03031_HH, expressed in the head.    40   2.1    2
CR238085|CR238085.1 Forward strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN353n23.    34   2.7    2
dna update 2004.12. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   262   2e-69
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   254   4e-66
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   241   3e-62
AL844507_193(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   234   4e-60
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   234   4e-60
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   219   8e-56
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   218   2e-55
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    218   2e-55
AM494971_416(AM494971|pid:none) Leishmania braziliensis chromoso...   217   5e-55
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   216   9e-55
protein update 2009. 4. 2
PSORT 

 psg: 0.96  gvh: 0.57  alm: 0.13  top: 0.57  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHI614 is nuc
5' end seq. ID CHI614F
5' end seq. 
>CHI614F.Seq
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
NGGGAATTATNTACAAAACTTTCAAACANATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTANCAATAATTAATNGGGTATATAATTNATTTTCTGGGCATTC
TTCTGAACATACCAAAAACNAGTTAAAGGNGGCGTCCAAAACTTCAAAAAAAANAANNNN
NNNNNN
Length of 5' end seq. 246
3' end seq. ID CHI614Z
3' end seq. 
>CHI614Z.Seq
NNNNNNNNNNTGATAATCATACATTCCTTAGGGAGAATCGTGATCCAGTCAAGAAAATGA
AACATCTCCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCT
TTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTAT
GTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTAC
TTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGT
CTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAA
ACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCAT
AACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGT
CCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTAC
ATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTT
AAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGAT
GGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCA
ATATTTTATTATCAGGTTTTAGG
Length of 3' end seq. 743
Connected seq. ID CHI614P
Connected seq. 
>CHI614P.Seq
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
NGGGAATTATNTACAAAACTTTCAAACANATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTANCAATAATTAATNGGGTATATAATTNATTTTCTGGGCATTC
TTCTGAACATACCAAAAACNAGTTAAAGGNGGCGTCCAAAACTTCAAAAAAAANAA----
------TGATAATCATACATTCCTTAGGGAGAATCGTGATCCAGTCAAGAAAATGAAACA
TCTCCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTGG
AACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTAT
ATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTTG
CAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGTCTAA
ATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTC
AAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACG
TTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCAA
TCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCA
AAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAAC
ACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTA
GATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATAT
TTTATTATCAGGTTTTAGG
Length of connected seq. 969
Full length Seq ID -
Full length Seq. -
Length of full length seq. -