NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI610
Library CH
(Link to library)
Clone ID CHI610
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14350-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI610 (CHI610Q) /CSM/CH/CHI6-A/CHI610Q.Seq.d/
AATTCAAACACACACCTAACACACTACTCTCAAAAAAAAAAGTAATAAATAAATAAATAA
TAAATTAATTAAATAAATAAATAAAATTTTATTCATATTTAATTAAATTTTCTTTCTTAA
AATAAATATAACCTCAATATGTTTTTTTTTTTTTTTTTGGATTTAAAAAAAAAAXXXXXX
XXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iqtht*httlkkksnk*innklik*inkilfifn*IFFLKINITSICFFFFFWI*kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nsnthlthysqkkk**ink**in*ink*nfihi*lnfls*nkynlnmfffffldlkk---


Frame B:
iqtht*httlkkksnk*innklik*inkilfifn*IFFLKINITSICFFFFFWI*kk---


Frame C:
fkhtpntllskkkvink*iin*lnk*ikfysylikfsflk*i*pqyvfffffgfkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI610 (CHI610Q) /CSM/CH/CHI6-A/CHI610Q.Seq.d/                         62   3e-09
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX926299|AX926299.1 Sequence 3 from Patent WO02068651.             40   12     1
AF536943|AF536943.1 Barley mild mosaic virus segment RNA2, complete sequence.    40   12     1
AL356953|AL356953.17 Human DNA sequence from clone RP11-572A16 on chromosome 1.    40   12     1
dna update 2004.12. 7
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 76,933,823
protein update 2009. 4. 2
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHI610 is cyt
5' end seq. ID CHI610F
5' end seq. 
>CHI610F.Seq
AATTCAAACACACACCTAACACACTACTCTCAAAAAAAAAAGTAATAAATAAATAAATAA
TAAATTAATTAAATAAATAAATAAAATTTTATTCATATTTAATTAAATTTTCTTTCTTAA
AATAAATATAACCTCAATATGTTTTTTTTTTTTTTTTTGGATTTAAAAAAAAAANNNNNN
NNNN
Length of 5' end seq. 184
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -